RetrogeneDB ID: retro_mluc_1367

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429827:4879356..4880306(-)
• Located in intron of: ENSMLUG00000007388

Retrocopy information

• Ensembl ID: ENSMLUG00000007427
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UBLCP1
• Ensembl ID: ENSMLUG00000006359
• Aliases: None
• Description: None

Sequence

>retro_mluc_1367
ATGACTCTCCCTATCATCATAAAATGGGGTGGACAGGAATATTCAGTGACCACACTTTCAGAAGATGATACTGTGCTGGA
TCTCAAACAGTTTCTCAAGACCCTTACAGGAGTGCTACCAGAACGACGGAAATTACTTGGACTTAAAGTTAAAGGCGCAA
ACCTGCAGAGAATGACGTTAAACTTGGAGCTCTCAAACTGAGACCAAATACTAAAATCATGATGATGGGAACTCGTGAGG
AGAGCTTGGGAGATGTCTTAGGTCCGCCTCCTGACAACGGTGATGTTGTCAATGACTTTGATATTGAAAATGAAGTAGTT
GAAGTAGAAAATAGGGAAGAAAACCTGAAAATTTCTCGCAGAGGAAAAGAATACAAAGTGGAAATTTTGAATCCACCCAG
GGAAGGGAAAAAGCTTTTGGTACTAGACGTTGATTATACGTTATTTGACCATAGGTCTTGTGCAGAGACTGTGGTCGAAT
TAATGCGGCCATATCTTCGTGAATTCCTAACATCTGCATATGAGGATTATGACGTTATTTGGTCTGCAACAAATATGAAG
TGGATTGAAGCTAAAATGAAAGAGCTGGGAGTGAGCACAAATGCAAATTATAAGATCACCTTTGTTTTGGACAGTGCTGC
TATGATGACAGTGCATACGCCAAGGAGAGGATTAATAGATGTAAAGCCTCTTGGTGTTTTATGGGGGAAGTTTTCAGAGT
TTTACAGCAAAAAGAACACCATTATGCTTGATGACATAGGAAGAAATTTTCTAATGAACCCACAGAATGGACTAAAGATA
AGGCCTTTTATAAAAGCCCACCTAAATCGAGATAAAGACAAAGAACTTTTCAAATTAACTCAGTACCTCAAGGAAATAGC
AAAATTAGATGACTTTTTGGACCTAAATTACAAATATTGGGAAAGATATCTCTCAAAGAAGCAAGGACAG

Alignment

ORF - retro_mluc_1367 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.5 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MALPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGL-KVKG-KPAENDVKLGALKLKP
          M.LPII.KWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPER.KLLGL.K.K..KPAENDVKLGALKL.P
Retrocopy MTLPIIIKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERRKLLGL>KLKA>KPAENDVKLGALKLRP

Parental  NTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISRRVKEYKVEILNPPREGKK
          NTKIMMMGTREESL.DVLGPPPDN.DVVNDFDIE.EVVEVENREEN.LKISRR.KEYKVEILNPPREGKK
Retrocopy NTKIMMMGTREESLGDVLGPPPDNGDVVNDFDIENEVVEVENREEN-LKISRRGKEYKVEILNPPREGKK

Parental  LLVLDVDYTLFDHRSCAETGVELM-PYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKIT
          LLVLDVDYTLFDHRSCAET.VELM.PYL.EFLTSAYEDYD.VIWSATNMKWIEAKMKELGVSTNANYKIT
Retrocopy LLVLDVDYTLFDHRSCAETVVELMRPYLREFLTSAYEDYD-VIWSATNMKWIEAKMKELGVSTNANYKIT

Parental  FMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSEFYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNR
          F.LDSAAM.TVHTPRRGLIDVKPLGV.WGKFSEFYSKKNTIM.DDIGRNFLMNPQNGLKIRPF.KAHLNR
Retrocopy FVLDSAAMMTVHTPRRGLIDVKPLGVLWGKFSEFYSKKNTIMLDDIGRNFLMNPQNGLKIRPFIKAHLNR

Parental  DKDKELLKLTQYLKEIAKLDDFLDLNHKYWERYLSKKQGQ
          DKDKEL.KLTQYLKEIAKLDDFLDLN.KYWERYLSKKQGQ
Retrocopy DKDKELFKLTQYLKEIAKLDDFLDLNYKYWERYLSKKQGQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1367 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000007691	1 retrocopy	retro_chof_51,
Echinops telfairi	ENSETEG00000000170	1 retrocopy	retro_etel_1142,
Microcebus murinus	ENSMICG00000010060	2 retrocopies	retro_mmur_1083, retro_mmur_1319,
Myotis lucifugus	ENSMLUG00000006359	1 retrocopy	retro_mluc_1367 ,
Monodelphis domestica	ENSMODG00000008063	2 retrocopies	retro_mdom_1251, retro_mdom_1351,
Mustela putorius furo	ENSMPUG00000013396	1 retrocopy	retro_mputfur_1098,
Mus musculus	ENSMUSG00000041231	1 retrocopy	retro_mmus_762,
Oryctolagus cuniculus	ENSOCUG00000002224	1 retrocopy	retro_ocun_1036,
Tupaia belangeri	ENSTBEG00000008983	1 retrocopy	retro_tbel_41,
Tursiops truncatus	ENSTTRG00000005876	1 retrocopy	retro_ttru_761,