RetrogeneDB ID: retro_mluc_1378

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429828:2071169..2071405(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HCST
• Ensembl ID: ENSMLUG00000016008
• Aliases: None
• Description: None

Sequence

>retro_mluc_1378
ATGATCCCTCCAGGCAACATCCTGCTTCTACTTTTGCTCCCAGTGGCTGCTGCTCAGATAACTCCACATTCCTGTTCAGG
ATGTGGGCCCCTCCCCCTGCCACTCCTGGCAGACCTTGTAGCTGCTGATGCTCTGGGGTCTCTGCTAATTGTGGTGGTGG
CGTTTATGTGTGCCACCCATGTGACACGCCCATCCAAGAAGATGGCAAAGTCTACATCAACATGCCTGGCAAGGGC

Alignment

ORF - retro_mluc_1378 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.5 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MLPPGNILLLLLLPVAAAQVTPGSYSGCGPLPLPLLAGLVAADAVVSLLIVVVVFMCAS-PRDRPTQEDG
          M.PPGNILLLLLLPVAAAQ.TP.S.SGCGPLPLPLLA.LVAADA..SLLIVVV.FMCA..P.D.P.QEDG
Retrocopy MIPPGNILLLLLLPVAAAQITPHSCSGCGPLPLPLLADLVAADALGSLLIVVVAFMCAT<PCDTPIQEDG

Parental  KVYINMPGRG
          KVYINMPG.G
Retrocopy KVYINMPGKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1378 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000016008	1 retrocopy	retro_mluc_1378 ,