RetrogeneDB ID: retro_mluc_1498

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429850:4711955..4712411(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IL33
• Ensembl ID: ENSMLUG00000009083
• Aliases: None
• Description: None

Sequence

>retro_mluc_1498
TCTTTTTCCCTGAGCACATATAGCGATCAATCCATTACTTTTGGTTTTGCGGGTGGAGGTTATGAGATCTATGTTGAAGA
TTTGAGGGAAAAACAAGAGAAAGACAAGGTATTGTTCTGTTACTATGTCTTGCAGTTACCTGCAAGTGAAACAGGTGATT
GTGGTGATTGTCACAAATGAATGGTAAGCCTCAGTCTTACAAAAGACAAAGATTTCTTGCTGCATGCCAACAACAAGGAG
CACTCTGTGAAGCTACAGAAATGTGAAAAATCGTTGCCAGACCAGATTTTTTTTCTTCATACTGAGCTCCAGCCCTCCCC
ATGTGTTTCATTTGAATGTAAGAGCAATCCTGGATTGTTTATAGGAGTAAAGGATAACCATGTTGCTCTAATTAAATTAA
AAGACCAAACTGAGCATTCAAGAAGAGAGAATATAAAATTTAAGCTGTCTTGAATG

Alignment

ORF - retro_mluc_1498 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.78 %
• Parental protein coverage: 53.55 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SVSLSTYDNQSITFVVGDEGYYINVDDLGTEGEKDKVLFHLYDSQLAASGTGDDVDGHKVMVRMSPANNK
          S.SLSTY..QSITF.....GY.I.V.DL....EKDKVLF..Y..QL.AS.TGD..D.HK.MV..S....K
Retrocopy SFSLSTYSDQSITFGFAGGGYEIYVEDLREKQEKDKVLFCYYVLQLPASETGDCGDCHK*MVSLSLTKDK

Parental  DFLLHA--EEHSVKVQKYENSLPDQTLFLLHKELGPSKCVSFECNSKPGVYLGVEGNHLALIEPNDQTAH
          DFLLHA...EHSVK.QK.E.SLPDQ....LH.EL.PS.CVSFEC.S.PG...GV..NH.ALI...DQT.H
Retrocopy DFLLHANNKEHSVKLQKCEKSLPDQ-XXXLHTELQPSPCVSFECKSNPGLFIGVKDNHVALIKLKDQTEH

Parental  LRRKNIIFKLSEM
          .RR.NI.FKLS.M
Retrocopy SRRENIKFKLS*M

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1498 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009083	1 retrocopy	retro_mluc_1498 ,