RetrogeneDB ID: retro_mluc_1527

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429855:3810750..3811488(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DNAJC7
• Ensembl ID: ENSMLUG00000011968
• Aliases: None
• Description: None

Sequence

>retro_mluc_1527
GGAAGTCTACCAGAGGGCAAATGCCACCTATGTCTAGGGAGTGGCAATAGCAGCTTGTCAGTTTCCAGAGAGCCCTAGAA
CTGGATCACAAAAATGCTCAGGCATGGCGGGAGTTTGGGAACGCTAATGCAGTCAAGGACTAGGGGGAAATAGCTGAGAT
GGATTTAGAGAAGTGGGATTTTTGGAAGGTTGCTCTTTGCATAGACCTGTGTCCTAAAATTTGCCCCTGCCTGCCATTGC
TTCAAAATCCTCCAAGCAGAATGTTTAGCCATGCTGGGTCCTTCTCCAGAAGCACAGTCGGTGGCCGGTGACATTTTTAC
AAATGGATCCACCAACGTGGATGCTCTGTATGTCCGAGGTCTTTGCCTCTATTACGAAGGCCATATCGAGAAGATGGTTC
AGTTTTTTGTACAGGCTCTCAGGATGGCTCCTGACCACGAGAAGGCCTGCGTGGCTTGCAGAAATGCCAAAACACTTAAA
GCAAAGAGAGATGGGAATAAAGCATTTAAAGAAGGGAATTGCAAGCTAGCATAGGAACAGTCCATCAAAGTCCTGGGGAT
AGACCCCAACACTATAAAAACAAATGCTAAATTCTTCTCGGGTACAGTTCATTCCAAGCTTAGGGAACCATATGATGCAA
TAGAAGACTGCACAGATGCAGGGGAGCTCGGTGGCATGTGTGTGAAAGCCTTCTGGAGAAGAGCTCAGTGCTACATGGAC
ACTGAGGTACATGATCAA

Alignment

ORF - retro_mluc_1527 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.32 %
• Parental protein coverage: 50.4 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GHLREGKCHLSLGNAMAACR-SFQRALELDHKNAQAQQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMD
          G.L.EGKCHL.LG........SFQRALELDHKNAQA..EF.NANAV.....IAE.D.EK.DF.KV..C.D
Retrocopy GSLPEGKCHLCLGSGNSSLS<SFQRALELDHKNAQAWREFGNANAVKD*GEIAEMDLEKWDFWKVALCID

Parental  RA-LEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQ
          ...L.FAPACH.FKIL.AECLAMLG..PEAQSVA.DI....STN.DALYVRGLCLYYE..IEK.VQFFVQ
Retrocopy LC>LKFAPACHCFKILQAECLAMLGPSPEAQSVAGDIFTNGSTNVDALYVRGLCLYYEGHIEKMVQFFVQ

Parental  ALRMAPDHEKACVACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNS
          ALRMAPDHEKACVACRNAK.LKAK..DGNKAFKEGN.KLA.E.....LGIDPN.IKTNAK.....GTV.S
Retrocopy ALRMAPDHEKACVACRNAKTLKAKR-DGNKAFKEGNCKLA*EQSIKVLGIDPNTIKTNAKFF--SGTVHS

Parental  KLRKLDDAIEDCTSAVKLDDTYIKAYLRRAQCYMDTEQYEE
          KLR...DAIEDCT.A..L.....KA..RRAQCYMDTE....
Retrocopy KLREPYDAIEDCTDAGELGGMCVKAFWRRAQCYMDTEVHDQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1527 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000015749	1 retrocopy	retro_cfam_451,
Callithrix jacchus	ENSCJAG00000035699	2 retrocopies	retro_cjac_2381, retro_cjac_2475,
Homo sapiens	ENSG00000168259	1 retrocopy	retro_hsap_3524,
Gorilla gorilla	ENSGGOG00000010230	2 retrocopies	retro_ggor_2382, retro_ggor_396,
Myotis lucifugus	ENSMLUG00000011968	2 retrocopies	retro_mluc_1232, retro_mluc_1527 ,
Macaca mulatta	ENSMMUG00000016118	3 retrocopies	retro_mmul_1084, retro_mmul_1854, retro_mmul_501,
Nomascus leucogenys	ENSNLEG00000011230	2 retrocopies	retro_nleu_1569, retro_nleu_490,
Pongo abelii	ENSPPYG00000008402	2 retrocopies	retro_pabe_2911, retro_pabe_317,
Pan troglodytes	ENSPTRG00000009188	2 retrocopies	retro_ptro_2393, retro_ptro_304,