RetrogeneDB ID: retro_mluc_1551

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429860:2995851..2996422(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GOLPH3L
• Ensembl ID: ENSMLUG00000003484
• Aliases: None
• Description: None

Sequence

>retro_mluc_1551
ATGGGAGTGAGCAAGAACTGTGAAAAGAAGGTAGAAAGTGAGGACGACCTCATCAAGGCAGGACTCCAGGCAGTGAAGAC
TCTGGAGACGAAGGATATTCGCCACAGGAAGTGGTGGAAGAAGCATTGCTTCTGGGACTAAAAGGTAAAGAGGTGACACA
CCTTTCTGGAATGACTGCACATCGTCTGGCCTGCGAGGGGCATTCTGACAGAGCTGGTCCTGAGGGGTCCACTCCATCTG
GAACCCCCACCATACGTAAGAAGTGACTACAGGACAGACAGGTACTGCTGAAGTCAGACAGCCCGCTGGGTGACGTTTTA
CTGGATGAAACTCTCAAACACATCAAAGCCACTGACCCACAGAAACGGTCCAGACATGGATAGAGCTACTCACTGGCAAA
ACTTGGACCCCCTTCAAATTACAATACCAGCTGAGAAATGTAAGAGAGTGCATTGCAAAGAACCTAAAAGAGAAGGTGAT
TCTAACCACCGAGAAGCAAAATTTCCTCCTATTTGACATGACTATTCATCCAGCGACCAATACAACAGAGAAACGACGAC
TAACTGAAAAG

Alignment

ORF - retro_mluc_1551 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.6 %
• Parental protein coverage: 67.37 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MEVGKNSEKKVESEEDT-NQDRSSDNEDSGDSKDIRLTLMEEVLLLGLKDKE-GYTSFWNDCISSGLRG-
          M.V.KN.EKKVESE.D...Q.R....EDSGD.........EE.LLLGLK.KE.G.T.FWNDC.SSGLRG.
Retrocopy MGVSKNCEKKVESEDDL<HQGRTPGSEDSGDEGYSPQEVVEEALLLGLKGKE<GDTPFWNDCTSSGLRG<

Parental  GILIELAMRGRIYLEPP-TMRKKRLLDRKVLLKSDSPTGDVLLDETLKHIKATEP-TETVQTWIELLTGE
          GIL.EL..RG...LEPP.T.RKK.L.DR.VLLKSDSP.GDVLLDETLKHIKAT.P.TETVQTWIELLTG.
Retrocopy GILTELVLRGPLHLEPP<TIRKK*LQDRQVLLKSDSPLGDVLLDETLKHIKATDP<TETVQTWIELLTGK

Parental  TWNPFKLQYQLRNVRERIAKNLVEKGILTTEKQNFLLFDMTTHPVTNTTEKQRLVKK
          TW.PFKLQYQLRNVRE.IAKNL.EK.ILTTEKQNFLLFDMT.HP.TNTTEK.RL..K
Retrocopy TWTPFKLQYQLRNVRECIAKNLKEKVILTTEKQNFLLFDMTIHPATNTTEKRRLTEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1551 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000020357	1 retrocopy	retro_btau_1256,
Choloepus hoffmanni	ENSCHOG00000013505	2 retrocopies	retro_chof_1173, retro_chof_1603,
Myotis lucifugus	ENSMLUG00000003484	1 retrocopy	retro_mluc_1551 ,
Rattus norvegicus	ENSRNOG00000047620	1 retrocopy	retro_rnor_2682,