RetrogeneDB ID: retro_mluc_158

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429793:2703184..2704084(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023946
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017278
• Aliases: None
• Description: None

Sequence

>retro_mluc_158
ATGACGGGGAAGAAGTCTTCCCAGGAGAAGCGGCACAAAAGGAGCGGCCCAGAGCCCAGCGAGCGCCGGAAGCAGCGGCG
GAGCACAGATTCGGCCTCCGGGGTGCCAGGCTCGGCGCCGCAGGAAGCCAAATATCTTTCACCAACTTTGGAAAAAGAAT
TATTCTTGGCAGAGCACAGTGATCTTGAAGAAGGTGGTCTGGACCTGACTGTGTCATTAAAACCAGTTAGTTTCTACCTA
TCAGACAAAAAAGAAATGCTTCAGCAGTGCTTCTGTATCATCGGAGAGAAGAAGTTAAAGAAAATGCTGCCTGACGTGTT
AAAGAACTGTTCAGTAGAAGAAATTAAAAAATTATGCCAAGAACAGTTAGAACTCCTATCTGAAAAAGAAATATTGAAGA
TTCTTGAGGGTGACAATGGTATGGACTCTGATATGGAAGAGGCGGCAGATGATGGCTCGAAGAAGGGATCTGATTTAGTC
AGTCAACAAGACATCTGTACAGATTCTTCTTCATCCCTGAAAGAGAACAAGCAACCTGAAGGTCTGGAATTAAAACAAGG
CAAAGGGGGCGATAGTGATGTTCTCAGTATACATGCAGATGCTTATGACAGCGACATAGAAGGCCCATGCAATGAAGAGG
CCGCTGCTCCTGAGGTCGCAGACAATACAGTCCAGAGTGAAGCTGGTCAGATAGATGATCTGGAGAAAGACATTGAGAAA
AGTGTGAATGAGATTCTGGGACTGGCAGAGTCTAGCCCAAAGGAGCCCAAAGCAGCTACCCTAACTGTTCCTCCACCAGA
AGATGTTCAGCTTTCCGCACCGCAGCTGGAGCTGCTAGAACTTGAGATGAGGGCAAGAGCCATCAAAGCCCTGATGAAAG
CTGGTGATATGAAAAAGCCA

Alignment

ORF - retro_mluc_158 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.98 %
• Parental protein coverage: 99.62 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EAKYLLPTLEKELFLAEHSDLEEGGLDLTVSLKPVSFYISDKKEMLQQCFCIIGEKKLQKMLPDVLKNCS
          EAKYL.PTLEKELFLAEHSDLEEGGLDLTVSLKPVSFY.SDKKEMLQQCFCIIGEKKL.KMLPDVLKNCS
Retrocopy EAKYLSPTLEKELFLAEHSDLEEGGLDLTVSLKPVSFYLSDKKEMLQQCFCIIGEKKLKKMLPDVLKNCS

Parental  VEEIKKLCQEQLELLSEKKILKILEGDNGMDSDMEEEADDGSKKGSDLVSQQDICIDSSSSLKENKQPEG
          VEEIKKLCQEQLELLSEK.ILKILEGDNGMDSDMEE.ADDGSKKGSDLVSQQDIC.DSSSSLKENKQPEG
Retrocopy VEEIKKLCQEQLELLSEKEILKILEGDNGMDSDMEEAADDGSKKGSDLVSQQDICTDSSSSLKENKQPEG

Parental  LELKQGKGEDSDVLSINADAYDSDIEGPCNEEAAAPEVPENTVQSEAGQIDDLEKDIEKSVNEILGLAES
          LELKQGKG.DSDVLSI.ADAYDSDIEGPCNEEAAAPEV..NTVQSEAGQIDDLEKDIEKSVNEILGLAES
Retrocopy LELKQGKGGDSDVLSIHADAYDSDIEGPCNEEAAAPEVADNTVQSEAGQIDDLEKDIEKSVNEILGLAES

Parental  SPKEPKAATLTVPPPEDVQPSAQQLELLELEMRARAIKALMKAGDIKKP
          SPKEPKAATLTVPPPEDVQ.SA.QLELLELEMRARAIKALMKAGD.KKP
Retrocopy SPKEPKAATLTVPPPEDVQLSAPQLELLELEMRARAIKALMKAGDMKKP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_158 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000017278	1 retrocopy	retro_mluc_158 ,
Rattus norvegicus	ENSRNOG00000007299	1 retrocopy	retro_rnor_594,