RetrogeneDB ID: retro_mluc_1637

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429876:2424275..2424884(+)
• Located in intron of: ENSMLUG00000017440

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AEBP2
• Ensembl ID: ENSMLUG00000006293
• Aliases: None
• Description: None

Sequence

>retro_mluc_1637
TATATAACACTGTCAACCTGTCAGAGTTGGTTATAGAGGCATATGCTGACACACAGTGGAGACAAACCTTTCAAGTGTGT
TGTTGGAGGCTGCAATGCCAGCTTTGCTTCTCAGGGAGGTCTAGCTCACCACGTACCCACACCCTTCAATCAGCAGAACT
CCTCAAAAGTTTCTAGCCAACCAAAGGCCAAAGAAGAATCTCCTTCTAAAGCTGGAATGAGCAAAAGAAGGAAATTAAAG
AACAAAAGACGATGCTCGTTACCATGACCACGTGATTTCTTCGATGCACAAACACTGGATGCGATAAGACATCAAGCCAT
ATGCTTTAACCTCTCAGCTCATATAGGAAGTTTAGGGAAGGGACACAGTGTTTTTCATAGTACTGTAAAAGCTAAGAGAA
AAGAGGATTCTGGAAAGATAAAACTTTTGCTTCATTGGATGTCTGAAGATATTCCGCCTGATGTGTGGGTGAATGAAAGT
GAGTGACGTCAATTAAAAACTAAAGTAATTCATTTATCAAAGCTACCCAAAGATACTGCCTTGCTTTTGGACCCAAATAT
ATACAGAACAATGCTGCAGAAGAGGTTGAAGAAGTAAAAAATACATAAA

Alignment

ORF - retro_mluc_1637 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.75 %
• Parental protein coverage: 50.87 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YNTPSTSQSWLQRHMLTHSGDKPFKCVVGGCNASFASQGGLARHVPTHFSQQNSSKVSSQPKAKEESPSK
          Y.T.ST.QSWL.RHMLTHSGDKPFKCVVGGCNASFASQGGLA.HVPT.F.QQNSSKVSSQPKAKEESPSK
Retrocopy YITLSTCQSWL*RHMLTHSGDKPFKCVVGGCNASFASQGGLAHHVPTPFNQQNSSKVSSQPKAKEESPSK

Parental  AGMNKRRKLKNKRRRSLPRPHDFFDAQTLDAIRHRAICFNLSAHIESLGKGHSVVFHSTVIAKRKEDSGK
          AGM.KRRKLKNKRR.SLP.P.DFFDAQTLDAIRH.AICFNLSAHI.SLGKGHS.VFHSTV.AKRKEDSGK
Retrocopy AGMSKRRKLKNKRRCSLP*PRDFFDAQTLDAIRHQAICFNLSAHIGSLGKGHS-VFHSTVKAKRKEDSGK

Parental  IKLLLHWMPEDILPDVWVNESERHQLKTKVVHLSKLPKDTALLLDPNIYRTMPQKRLKRTLIRK
          IKLLLHWM.EDI.PDVWVNESE..QLKTKV.HLSKLPKDTALLLDPNIYRTM.QKRLK...I.K
Retrocopy IKLLLHWMSEDIPPDVWVNESE*RQLKTKVIHLSKLPKDTALLLDPNIYRTMLQKRLKK*KIHK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1637 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000007440	1 retrocopy	retro_cpor_431,
Myotis lucifugus	ENSMLUG00000006293	1 retrocopy	retro_mluc_1637 ,
Oryctolagus cuniculus	ENSOCUG00000016677	2 retrocopies	retro_ocun_1207, retro_ocun_1672,
Rattus norvegicus	ENSRNOG00000008929	1 retrocopy	retro_rnor_875,