RetrogeneDB ID: retro_mluc_1688

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429885:2361250..2362408(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PPME1
• Ensembl ID: ENSMLUG00000012151
• Aliases: None
• Description: Protein phosphatase methylesterase 1 [Source:UniProtKB/TrEMBL;Acc:G1PJY0]

Sequence

>retro_mluc_1688
ATGTCCGCCCTCGAGAAGAGCATGCACCTCGGCCGCCTGCCCTCTCGCCCCCCTCTACCCGGCAACGGAGGCAATCAGAG
CGGAGCCAAGATGCGAATGGGCCCTGGAAGAAAACGGGATTTTTCCCCGGTATCTTGGAGTCAGTACTTTGAGTCCATGG
AAGATGTAGAAGTAGAGAATGAAACTGGCAAGGATTCTTTTCGGGTTTATAAGAGTGGTTCAGAGGGTCCAGTCCTACTC
CTTTTGCATGGAGGAGGCCATTCCGCCCTTTCCTGGGCTGTGTTCACGGCAGCGATCATTAGCAGGGTTCAATGTAGGAT
TGTAGCTTTGGATCTGTGAGGTCATGGTGAAACAAAAGTCAAGAATTCTGAAGATCTGTCTGCAGAAACAATGGCAAAAG
ATGTTGGCAATGTAATTGAAGCCATGTATGGGGACCTCCCTCCTCCAATTATGCTGATTGGACATAGCATGGGTGGAGCT
ATTGCAGTCCACACAGCATCATCCAACCTGGTGCCAAGCCTCCTGGGTCTATGCGTGATTGATGTTGTGGAAGGTACAGC
CATGGATGCTCTTAATAGCATGCAGAATTTCTTACGTGGTCATCCTAAAACCTTCAAGTCTCTGGAGAATGCCATTGAAT
GGAGTGTGAAGAGTGGCCAGATTAGAAATCTGGAGTCTGCCCGTGTCTCCATGGTTGGCCAAGTCAAAGAGTGTGAAGGA
ATTACAAGTCCAGAAGGCACAAAATCTGTAGTGGAAGGAATCATAGAGGAAGACGAAGATGATGAAGAAGGAAGTGAATC
AGTAAACAAGAGGAAGAAGGAAGATGACATGGAGACCAAGAAAGACCATCCATACACTTGGAGGATTGAACTGGCAAAAA
CTGAAAAATACTGGGATGGCTGGTTCCGAGGCTTATCCAATCTCTTTCTTAGTTGTCCTATTCCTAAATTGCTGCTCTTG
GCTGGTGTTGATAGATTGGATAAAGATCTGACTATTGGCCAAATGCAAGGGAAGTTCCAGATGCAGGTCCTACCTCAGTG
TGGCCACGCAGTCCATGAGGATGCCCCAGACAAGGTAGCTGAAGCTGTTGCCACTTTCCTGATCCGGAACAGGTTTGCAG
AGTCCGTCGGTGGATTCCAGTGTTTGTTTCCTGGCTGT

Alignment

ORF - retro_mluc_1688 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.94 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSALEKSMHLGRLPSRPPLPGNGGNQSGAKMRMGPGRKRDFSPVSWSQYFESMEDVEVENETGKDSFRVY
          MSALEKSMHLGRLPSRPPLPGNGGNQSGAKMRMGPGRKRDFSPVSWSQYFESMEDVEVENETGKDSFRVY
Retrocopy MSALEKSMHLGRLPSRPPLPGNGGNQSGAKMRMGPGRKRDFSPVSWSQYFESMEDVEVENETGKDSFRVY

Parental  KSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRGHGETKVKNSEDLSAETMAKDVGNVIE
          KSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDL.GHGETKVKNSEDLSAETMAKDVGNVIE
Retrocopy KSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDL*GHGETKVKNSEDLSAETMAKDVGNVIE

Parental  AMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCVIDVVEGTAMDALNSMQNFLRGRPKTFKSLEN
          AMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCVIDVVEGTAMDALNSMQNFLRG.PKTFKSLEN
Retrocopy AMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCVIDVVEGTAMDALNSMQNFLRGHPKTFKSLEN

Parental  AIEWSVKSGQIRNLESARVSMVGQVKEKPRCEGITSPEGSKSVVEGIIEEDEDDEEGSESVNKRKKEDDT
          AIEWSVKSGQIRNLESARVSMVGQVKE...CEGITSPEG.KSVVEGIIEEDEDDEEGSESVNKRKKEDD.
Retrocopy AIEWSVKSGQIRNLESARVSMVGQVKE---CEGITSPEGTKSVVEGIIEEDEDDEEGSESVNKRKKEDDM

Parental  ETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQVLPQC
          ETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQVLPQC
Retrocopy ETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQVLPQC

Parental  GHAVHEDAPDKVAEAVATFLIRNRFAESVGGFQCVFPGC
          GHAVHEDAPDKVAEAVATFLIRNRFAESVGGFQC.FPGC
Retrocopy GHAVHEDAPDKVAEAVATFLIRNRFAESVGGFQCLFPGC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1688 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000003599	1 retrocopy	retro_cpor_131,
Myotis lucifugus	ENSMLUG00000012151	1 retrocopy	retro_mluc_1688 ,