RetrogeneDB ID: retro_mluc_1715

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429892:320749..321257(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000022738
• Aliases: None
• Description: None

Sequence

>retro_mluc_1715
ATTATTTCTATCATGAGAAATCCCACAGAAGTTAATATTACTGGTTATCATTTCTGGAAAGAAATAAAATGACCAGATAT
CCAAACTCACTTTTAGAATATTTTTAATGATTCCTACAAGGTAATGTGCCGCTGGGCTCATGGTTTGACCAAGTTTGTGG
CTATATGCTGACACAAAAGAAAGAAGATTTCCTATGGATATTGTATGAGGGGCTGCAACAGGACATGAGAGCCAGTGTGG
AGAGGAGCAGCCAATGCTTGGGCATGAAGCTAAGCTCAGAGCTGACCTCAGTCCTCAGGAATATACCTTCCCAGCCAGGA
GAGATAATAAAAAGAGCAATTCCTCTCTAACAACTGATACCTATATAGACACAACCAAAGTATGTTTTATGGGAAAAGGA
ATCACTGGGGACTGGGAAAGTCAATTCACAGTAACCCAGAGGGAAGCCTTTGATAATGTTTCTGAGGAGAAGATGGCCAG
ACTTCTTCTTGGCCTCTTCCCATGGGAA

Alignment

ORF - retro_mluc_1715 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.23 %
• Parental protein coverage: 69.51 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VIYIMRNPRDVIISGYHFHKTLK-ITKNPSSFEEYFEWFLRGHVPYGSWFDHIGGWLQMRGKENFLLISY
          .I.IMRNP..V.I.GYHF.K..K..T..P.S..EYF..FL.G.VP.GSWFD...G......KE.FL.I.Y
Retrocopy IISIMRNPTEVNITGYHFWKEIK<MTRYPNSLLEYF**FLQGNVPLGSWFDQVCGYMLTQKKEDFLWILY

Parental  EELHQDLRANVEKVSQFLGTKLSPEELDSVLKNV-TFQAMKDNKMSNFSLVPEIHMDHSKACFMRKGIAG
          E.L.QD.RA.VE..SQ.LG.KLS..EL.SVL.N..TF.A..DNK.SN.SL......D..K.CFM.KGI.G
Retrocopy EGLQQDMRASVERSSQCLGMKLS-SELTSVLRNI<TFPARRDNKKSNSSLTTDTYIDTTKVCFMGKGITG

Parental  DWKNQLTVAQQEAFDKVYQEKMAGLPPGLFPWE
          DW..Q.TV.Q.EAFD.V..EKMA.L..GLFPWE
Retrocopy DWESQFTVTQREAFDNVSEEKMARLLLGLFPWE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1715 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000022738	1 retrocopy	retro_mluc_1715 ,