RetrogeneDB ID: retro_mluc_1729

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429895:433457..434846(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GTF2H4
• Ensembl ID: ENSMLUG00000026371
• Aliases: None
• Description: None

Sequence

>retro_mluc_1729
ATGGAGAGCACCCCGTCGAGGGGTGGACTGAACCGAGCACACCTACAATGCAGGAATCTGCAGGAGTTCCTTGGGGGCCT
GAGCCCTGGGGTACTGGACCAACTCTACGGGCACCCTGCCACCTGCCTGGCTGTCTTCAGGGAGCTCCCATCGTTGGCTA
AGAACTGGGTGATGCGGATGCTCTTTCTGGAGCAGCCTTTGCCACAAGCTGCTGTGGCCCTGTGGGTGAAGAAGGAATTC
AGCAAAGCTCAGGAGGAAAGTACAGGGCTGCTGAGCGGCCTCCGGATCTGGCACACGCAGCTGCTTCCTGGTGGTCTCCA
GGGCCCCATCCTAAACCCCGTCTTCCGCCAGAACCTCCGCACTGCGCTTCTGGGTGGGGGCAAGGCCTGGTCTGATGACA
CAAGTCAGCTGGGACCAGACAAGCATGCCCGGGATGTCCCCTCACTGGATAAGTACGCCGAGGAGCGATGGGAGGTGGTC
CTGCACTTCATGGTGGGCTCCCCCAGTGCAGCCGTCAGCCAGGACTTGCCTCAGCTCCTCAGCCAAGCGGGGCTTATGAA
GAGTGCTGAGCCTGGAGAGCCGCCCTGCATCACCTCTGCTGGCTTCCAGTTCCTGTTGCTGGACACCCCCGCCCAGCTCT
GGTACTTCATGCTGCAGTACCTGCAGACGGCCCAGAGTCGGGGCATGGACCTAGTGGAGATCCTCTCCTTCCTCTTCCAG
CTCAGCTTCTCTACTCTGGGCAAGGATTACTCTGTGGAAGGTATGAGTGATTCTCTGTTGAATTTCCTGCAGCATCTGCG
TGAGTTTGGGCTTGTTTTCCAGAGGAAGAGGAAGTCTCGGCGGTACTACCCCACGCGCCTGGCCATCAATCTCTCATCAG
GTGTTTCTGGGGCGGGGGGCACTGCGCATTAGCCAGGCTTCATTGTCGTGGAAACCAATTACCGGCTGTACGCCCACACA
AAGTCGGAGCTGCAGATCGCCCTCATTGCCCTCTTCTCTGAGATGCTCTATCGCTTCCCCAACATGGTGGTGGCGCAGGT
CACCCGGGAGAGCGTGCAGCAGGCCATCGCCAGCGGCATTACAGCCCAGCAGATCATCCATTTCCTAAGGACAAGGGCCC
ACCCAGTGATGCTTAAACAGACACCTGTGCTGCCGCCCACCATCACAGACCAGATTCGGCTGTGGGAGCTGGAAAGGGAC
AGACTCCGCTTCACCGAGGGCGTCCTGTATAACCAGTTCCTGTCGCAAGTGGACTTTGAGCTGCTGCTGGCCCACGCGCG
GGAGCTGGGCGTGCTGGTGTTCGAGAACTCGGCCAAGCGGCTCATGGTGGTGACGCCTGCGGGACACCGCGACGTCAAGC
GCTTCTGGAAGCGGCAGAAGCACAGCTCC

Alignment

ORF - retro_mluc_1729 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.76 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MESTPSRGGLNRAHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQA
          MESTPSRGGLNRAHLQCRNLQEFLGGLSPGVLD.LYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQA
Retrocopy MESTPSRGGLNRAHLQCRNLQEFLGGLSPGVLDQLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQA

Parental  AVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRTALLGGGKAWSDDTSQLGPD
          AVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQG.ILNPVFRQNLRTALLGGGKAWSDDTSQLGPD
Retrocopy AVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGPILNPVFRQNLRTALLGGGKAWSDDTSQLGPD

Parental  KHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSAEPGEPPCITSAGFQFLLLDTP
          KHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDL.QLLSQAGLMKSAEPGEPPCITSAGFQFLLLDTP
Retrocopy KHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLPQLLSQAGLMKSAEPGEPPCITSAGFQFLLLDTP

Parental  -QLWYFMLQYLQTAQXRNLSIDPALSVTGVSDPSWLPLPQDYSVEGMSDSLLNFLQHLREFGLVFQRKRK
          .QLWYFMLQYLQTAQ.R.......LS.......S...L..DYSVEGMSDSLLNFLQHLREFGLVFQRKRK
Retrocopy AQLWYFMLQYLQTAQSRGMDLVEILSF--LFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRK

Parental  SRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVT
          SRRYYPTRLAINLSSGVSGAGGTAH.PGFIVVETNYRLYA.T.SELQIALIALFSEMLYRFPNMVVAQVT
Retrocopy SRRYYPTRLAINLSSGVSGAGGTAH*PGFIVVETNYRLYAHTKSELQIALIALFSEMLYRFPNMVVAQVT

Parental  RESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVD
          RESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVD
Retrocopy RESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVD

Parental  FELLLAHARELGVLVFENAAKRLMVVTPAGHGDVKRFWKRQKHSS
          FELLLAHARELGVLVFEN.AKRLMVVTPAGH.DVKRFWKRQKHSS
Retrocopy FELLLAHARELGVLVFENSAKRLMVVTPAGHRDVKRFWKRQKHSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1729 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000026371	1 retrocopy	retro_mluc_1729 ,