RetrogeneDB ID: retro_mluc_1740

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429898:804513..805123(+)
• Located in intron of: ENSMLUG00000004024

Retrocopy information

• Ensembl ID: ENSMLUG00000006189
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: FADS2
• Ensembl ID: ENSMLUG00000026963
• Aliases: None
• Description: None

Sequence

>retro_mluc_1740
GGGAAGGAGAAGAACCAGGGTGAGGGGGCCACCAAGCACAAGGCACTGGTGCCCACCTTCAGCTGGGAGGAAATTCAGAA
GCACAATCTTCTGCACCAAGTGACTCATCATCGCCCACAAGGTCTACATCACCACCAAATGGTCCAGCTGGCACCCGGGG
AGGCCACCAGGTCATTGGGCACTACACAGGGGAAGATGCTACAGATGCCTTCTGCACCTTCACCGTGACCTTGATTTTGT
GTGCAAGTTCATGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAACCCAGCCAGGACCGGGGCAAGAACTCCCAGA
TCACCGAGGACTTCCAGGCCCTGAAGAAGACTGCTGAGGACATGACCTGTTCAAGAGCAAGCATCTTTTCTTCCTCCTCC
TCCTGGCCCACCATCATCATGGAGAGCATCGCTTGGTTCACCATCTTTTACTTCGGCAATGGCTGGATCCCAACCGTCAT
CACACCCTTTGTCCTTGCTACCTCTCAGGCCCAAGCTGGCTGGCTGCAACACGATTACAGCCACCTCTCTGTCTGAAAGA
AGTCCATGTAGAACCACATCATCGATAAGTTCATCATTGGCCACTTAAAG

Alignment

ORF - retro_mluc_1740 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.6 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  GRGRNQGEGAPDREAPMP-FRWEEIQHN-LRTDKWLVIARKVYNITKWSSRHP-GG-RVIGHYAGEDATD
          G...NQGEGA....A..P.F.WEEIQ.......K.L.IA.KVY..TKWSS.HP.GG..VIGHY.GEDATD
Retrocopy GKEKNQGEGATKHKALVPTFSWEEIQKH>IFCTK*LIIAHKVYITTKWSSWHP>GGHQVIGHYTGEDATD

Parental  ALHAF-HRDLDFVRKFLKPL-IGELAPEEPSQDRGKNSQITEDFRALRKTAEDM-NLFKSNHLFFLLHLA
          A...F.HRDLDFV.KF.KPL.IGELAPEEPSQDRGKNSQITEDF.AL.KTAEDM..LFKS.HLFFLL.LA
Retrocopy AFCTF<HRDLDFVCKFMKPLLIGELAPEEPSQDRGKNSQITEDFQALKKTAEDM<DLFKSKHLFFLLLLA

Parental  H-IIAMETIAWFTVFYFGNGWIPTVITAFVLATSQAQAGWLQHDYGHLSVYKKSMWNHIVHKFIIGHLK
          H.II.ME.IAWFT.FYFGNGWIPTVIT.FVLATSQAQAGWLQHDY.HLSV.KKSM.NHI..KFIIGHLK
Retrocopy H>II-MESIAWFTIFYFGNGWIPTVITPFVLATSQAQAGWLQHDYSHLSV*KKSM*NHIIDKFIIGHLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1740 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000001712	1 retrocopy	retro_mluc_2108,
Myotis lucifugus	ENSMLUG00000026963	1 retrocopy	retro_mluc_1740 ,