RetrogeneDB ID: retro_mluc_1743

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429899:534329..535092(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RENBP
• Ensembl ID: ENSMLUG00000014271
• Aliases: None
• Description: None

Sequence

>retro_mluc_1743
GAGGACATGGAGAAGGAGCGAGAGACTCTGCAAGCCTGGAAGGAGCGCGTGGAGCAGGAGCTGGACTGCGTGGTGGCTTT
CTGGTTGGAGCACTCCCACGACCAGGAGCATGGGGGCTTCTTCACCTGCCTGGGCCGCAACGGGAAGGTGTATGACGACC
TCAAGTATGTCTGGCTGCAGGGGAGGCAGGTGTGGATGTACTGTCGCTTGTACCGCAGATTTGAGCGCTTCCGCCGCCCT
GAACTTCTGGATTCAGCTAAAGCAGGTGGCGAATTTTTGCTGCGCTATGCCCGAGTGGCACCTCCTGGGAAGAAGTGTGC
CTTTGTCCTGACGCGGGATGGCCGCCCGGTCAAGGTGCAGTGAACCATCTTTAGCGAGTGTTTCTACATCATGGCCATGG
ATGAGCTGTGGAGGGTGACAGGGGAAGCACGTTACCAGAGCGAAGCTGTGGAAGATGATGGATCAGATCGTCCACTGGGT
GCGGAAAGACCCATCGGGACTGGGCCGGCCCTGGCTCCCAGGGGCCCCAGCCTCAGAGTCCATGGCGGTGCCCATGATGC
TGCTCAACCTGGTGGAGCAGCTCGGGGAGGCCGACAAGGAGATGGCGAGCAAGTACGCGGAGCTGGATGATTGGTGCGCC
CAGAGGATTCTGCAGCATGTCCAGAGGGATGGGCAGGCTGTGCTGGAGAATGTGTCAGAGGATGGCAAGGAACTCCCCGG
TTGCCTGGGGAGACACCAGAATGCAGGCCACGCACTAGATTCT

Alignment

ORF - retro_mluc_1743 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.08 %
• Parental protein coverage: 61.5 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QDMEKERETLQAWKERVGQELDRVVAFWMEHSHDQEHGGFFTCLGRNGKVYDDLKYVWLQGRQVWMYCRL
          .DMEKERETLQAWKERV.QELD.VVAFW.EHSHDQEHGGFFTCLGRNGKVYDDLKYVWLQGRQVWMYCRL
Retrocopy EDMEKERETLQAWKERVEQELDCVVAFWLEHSHDQEHGGFFTCLGRNGKVYDDLKYVWLQGRQVWMYCRL

Parental  YRKFERFRRPELLDSAKAGGEFLLRYARVAPPGKKCAFVLTRDGRPVKVQRTIFSECFYIMAMDELWRVT
          YR.FERFRRPELLDSAKAGGEFLLRYARVAPPGKKCAFVLTRDGRPVKVQ.TIFSECFYIMAMDELWRVT
Retrocopy YRRFERFRRPELLDSAKAGGEFLLRYARVAPPGKKCAFVLTRDGRPVKVQ*TIFSECFYIMAMDELWRVT

Parental  GEARYQSEAVE-MMDQIVHWVRKDPSGLGRPWLPGAPASESMAVPMMLLNLVEQLGEADKEMASKYAELD
          GEARYQSEAVE.MMDQIVHWVRKDPSGLGRPWLPGAPASESMAVPMMLLNLVEQLGEADKEMASKYAELD
Retrocopy GEARYQSEAVE>MMDQIVHWVRKDPSGLGRPWLPGAPASESMAVPMMLLNLVEQLGEADKEMASKYAELD

Parental  AWCAQRILQHVQRDGQAVLENVSEDGKELPGCLGRHQNAGHALEA
          .WCAQRILQHVQRDGQAVLENVSEDGKELPGCLGRHQNAGHAL..
Retrocopy DWCAQRILQHVQRDGQAVLENVSEDGKELPGCLGRHQNAGHALDS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1743 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000014271	1 retrocopy	retro_mluc_1743 ,