RetrogeneDB ID: retro_mluc_1781

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429907:1442360..1442944(-)
• Located in intron of: ENSMLUG00000004889

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KCMF1
• Ensembl ID: ENSMLUG00000000979
• Aliases: None
• Description: None

Sequence

>retro_mluc_1781
TCTTCTCAGAGTTCATATTCTCCAGCAATAGGGAAGCCATGGGTCCTGTAGCTGAGCTTTTCTCTCAGTTATCAGGAGTG
AGACATTCTGCAAGAGGACAGTTTAATTCTTCCAGCCCTTCTGCTGCTCAGTTAGAACAAATGCAGCTGCAGCTGCAGCT
AGAAAAGCAGCAAGCCCAGGCAGCGCGACTGCAGACCGCACGCGGCAAGCTGGCGCACTGATACAAGGAGTATCACCACT
ACAATCACATTATCCACTGCAACAACCAAGATGGCTAACATGGAAGCAGTCAGCAAACTCCAGAATTCCCAATTTCTTTT
AACAAGGTTGAATGATCCTAAAATGTCTGACACAGAACACCAGACCATGCAAAGTGAGCGTGCAGACCGCAGCCTGTTTG
TTCAGGAGCTCCTGCTGATCACTCAGTGTGGAGAGAGTTCCCCTTAGATGAGGACGAATGGGGAGGGGGGATGGCAGATT
TTGGTGCTATGGGCTGTGTAGATGTTATGCCTTTAGATGTTGCTTTAGAAAACCTAAATTTAAAAGACAGTGATAAAGGA
AACGAGCCGTCACCACCTCCTCTT

Alignment

ORF - retro_mluc_1781 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.97 %
• Parental protein coverage: 52.08 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  SSQSSYSP-SNREAMDPIAAELLSQLSGVRRSAGGQLNSSGPSASQLQQLQMQLQLERQHAQAARQQLET
          SSQSSYSP.SNREAM.P.A.EL.SQLSGVR.SA.GQ.NSS.PSA.QL.Q.Q.QLQLE.Q.AQAAR..L.T
Retrocopy SSQSSYSP<SNREAMGPVA-ELFSQLSGVRHSARGQFNSSSPSAAQLEQMQLQLQLEKQQAQAAR--LQT

Parental  ARN-ASRRTNTSSVTTTITQSTATPNPANTESSQQTLQNSQFLLTRLNDPKMSEAERQSMESERADRSLF
          AR....R....S..TT.IT.STAT...AN.E.....LQNSQFLLTRLNDPKMS..E.Q.M.SERADRSLF
Retrocopy ARG>SWRTDTRSITTT-ITLSTATTKMANMEAVSK-LQNSQFLLTRLNDPKMSDTEHQTMQSERADRSLF

Parental  VQELLLSTLVREES-SSSDEDERGEMADFGAMGCVDIMPLDVALENLNLKESNKGNEPPPPPL
          VQELLL.T...E.S.........G.MADFGAMGCVD.MPLDVALENLNLK.S.KGNEP.PPPL
Retrocopy VQELLLITQCGESS<PLDEDEWGGGMADFGAMGCVDVMPLDVALENLNLKDSDKGNEPSPPPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1781 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000005786	1 retrocopy	retro_chof_1282,
Dasypus novemcinctus	ENSDNOG00000006752	2 retrocopies	retro_dnov_1000, retro_dnov_2063,
Echinops telfairi	ENSETEG00000001809	1 retrocopy	retro_etel_1685,
Myotis lucifugus	ENSMLUG00000000979	1 retrocopy	retro_mluc_1781 ,
Monodelphis domestica	ENSMODG00000015567	1 retrocopy	retro_mdom_1682,
Otolemur garnettii	ENSOGAG00000034863	2 retrocopies	retro_ogar_3140, retro_ogar_397,
Vicugna pacos	ENSVPAG00000010386	1 retrocopy	retro_vpac_650,