RetrogeneDB ID: retro_mluc_1782

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429907:2023597..2024080(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023006
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SAMD12
• Ensembl ID: ENSMLUG00000002603
• Aliases: None
• Description: None

Sequence

>retro_mluc_1782
ATGGCTGTGGAAGCTCTCCACTGCGGTTTGAATCCACAGGGTATTGATCATCCTGCTCATACTGAAGGCATTAAACTGCA
AATTGAAGGTGAAGGTGTTGAGTCTCAACCCATTAAAAAGAAACATTTCCAGAAGGTGCTTGACCAAAAAGGAACCCCCA
AGCGACTGCAGGCAGAAGCTGAGACGGCTAAGTCATCTACGGTGAAGCTGTCAAAACCAGTGGCTCTGTGGACTCAGCAG
CATGTCTGCAAGTGGGTGAAGAAACATTGTCCGAATCAGTATCAGATCTACAGCGAGTCATTCAAACAGCATGACATAAC
TGGGCGAGCTTTGCTGAGACTTACTGACAAAAAGCTTGAGCGAATGGGGATTGCCCAGGAAAACCTCCGGCAGCACATCT
TGCAACAGGTGCTCCAGCTGAAGGTGCGGGAAGAAGTCAGAAACCTACAGTTACTCACACAAGCCTCAATCGACGGTTCT
CCA

Alignment

ORF - retro_mluc_1782 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.27 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAVEALHCGLNSRGIDHPAHTEGIKLQIEGEGVESQPIKNKHFQKVLDQKGTPKRLQAEAETAKSSTVKL
          MAVEALHCGLN..GIDHPAHTEGIKLQIEGEGVESQPIK.KHFQKVLDQKGTPKRLQAEAETAKSSTVKL
Retrocopy MAVEALHCGLNPQGIDHPAHTEGIKLQIEGEGVESQPIKKKHFQKVLDQKGTPKRLQAEAETAKSSTVKL

Parental  SKPVALWTQQDVCKWLKKHCPNQYQIYSESFKQHDITGRALLRLTDKKLERMGIAQENLRQHILQQVLQL
          SKPVALWTQQ.VCKW.KKHCPNQYQIYSESFKQHDITGRALLRLTDKKLERMGIAQENLRQHILQQVLQL
Retrocopy SKPVALWTQQHVCKWVKKHCPNQYQIYSESFKQHDITGRALLRLTDKKLERMGIAQENLRQHILQQVLQL

Parental  KVREEVRNLQLLTQASIEGSP
          KVREEVRNLQLLTQASI.GSP
Retrocopy KVREEVRNLQLLTQASIDGSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1782 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002603	1 retrocopy	retro_mluc_1782 ,