RetrogeneDB ID: retro_mluc_1801

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429915:2640652..2641117(+)
• Located in intron of: ENSMLUG00000000271

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C17ORF79
• Ensembl ID: ENSMLUG00000016418
• Aliases: None
• Description: None

Sequence

>retro_mluc_1801
AGCGCCGAGGCTGGCTTTGCCCCGCATGACCACTCCGGTCAGGAGAGAGAGACTGAGAAAGCCACGGATGGACTAGCCAG
TGGAGCACAGAGCATCCCTAATGGTGGTCCTGCCGGTGATGAGGGCACCCATTCTGAAGAGGAAGGCTTTGCTATGGAGG
ATGAAGATTCTGATGGGGAACTGAATACCTGGGAGCTGCCAGAAGGGGTGTCCAGCCGTCTGCCTAGGGAACAGGCTGCT
GATCTTTTTAATGAGGACTGGGACTTAGAGTTGAAAGTGGATCAAGGGAATCTGTATGATGCTGATGACATCCAGGGCTG
CATTTCTCAAGAGGTCAAACCTTGGGTGTGCTGTGCCTCGAAAGGAGACATGATCTATGACCCCAGTTGGCATCATCCAC
CTCCACTGATACCCCATTATTCCAAGATGGTCTTTGAAACTGGACAGTTCGATGATGCTGAAGAC

Alignment

ORF - retro_mluc_1801 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.55 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SRQAGFAPHDHSGQERETEKAMDRLASGAQSIPNGGPASDEGTHSEEEGFAMEDEDSDGELNSWELPEGV
          S..AGFAPHDHSGQERETEKA.D.LASGAQSIPNGGPA.DEGTHSEEEGFAMEDEDSDGELN.WELPEGV
Retrocopy SAEAGFAPHDHSGQERETEKATDGLASGAQSIPNGGPAGDEGTHSEEEGFAMEDEDSDGELNTWELPEGV

Parental  SSRLPREQAADLFNEDWDLELKSDQGNPYDADDIQGCISQEVKPWVCCAPQGDMIYDPSWHHPPPLIPHY
          SSRLPREQAADLFNEDWDLELK.DQGN.YDADDIQGCISQEVKPWVCCA..GDMIYDPSWHHPPPLIPHY
Retrocopy SSRLPREQAADLFNEDWDLELKVDQGNLYDADDIQGCISQEVKPWVCCASKGDMIYDPSWHHPPPLIPHY

Parental  SKMVFETGQFDDAED
          SKMVFETGQFDDAED
Retrocopy SKMVFETGQFDDAED

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1801 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000001885	1 retrocopy	retro_btau_946,
Callithrix jacchus	ENSCJAG00000014110	1 retrocopy	retro_cjac_2739,
Myotis lucifugus	ENSMLUG00000016418	1 retrocopy	retro_mluc_1801 ,
Pongo abelii	ENSPPYG00000008153	1 retrocopy	retro_pabe_2109,
Rattus norvegicus	ENSRNOG00000000111	1 retrocopy	retro_rnor_2923,
Tupaia belangeri	ENSTBEG00000008542	1 retrocopy	retro_tbel_1528,
Tursiops truncatus	ENSTTRG00000009909	1 retrocopy	retro_ttru_225,