RetrogeneDB ID: retro_mluc_182

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429859:76755..79701(-)
• Located in intron of: ENSMLUG00000006735

Retrocopy information

• Ensembl ID: ENSMLUG00000025475
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000010964
• Aliases: None
• Description: None

Sequence

>retro_mluc_182
ATCACCGGAAGTGCCGCCATTCGACCAACCGGCCAACGGTGCGTTTCGGGGCCCACAGAGAAGTTGAGCCTCGAGGCCGC
AACCGCGCTTAGAGGGCCCGTCCGTCTTGGGGACATCTCTCTCCCGGAGGAGATGGACCTGAAGGTCTTGCGGTTCAAGA
ATAAGAAGCTAGCAGAGCGGCTGGAGCAGCGCCAGGCTTGTGAAGATGAACTCCGAGAGCGCATCGAGAAGCTGGAAAAG
CGGCAGGCCACCGATGACGCCACACTCCTCATCGTCAACCGCTACTGGGCCCAGCTGGAGGTAACTGTGGAAGCCCTTCT
CCGACGCCATGAGAAGCAGCGGGAGCTGTCGCCAGGTACACAGCCACCTGGGACCCAGGGGGGGCCGAGGTCAGAACTGA
GGGAGACCCTGCCCGCGCAGCGACGGCCCCCCCTGAGCGAGCCGGCGTTGGCTTTCCCGGTGAAACAGGGCGCCAGCAGC
AGTGAGGAGGTGGGGCCGCAGGGCCGGATGGAGTTCTCCAAGGCCGCCGTGTCGCGGGTGGTCGAGGCCTCAGCCCGCCT
ACAGCGCCAGGTGGAGGGACTCTGTCGGCGCGTCTGCAGTCGAGGGGGAGGTGAGCCCCGCGGTGAGGCGGCTCGGGCAC
GCACCCGGGAGCTGGGCTGTGAGAACCGGCGACTTCAGGCCTTGGCCACCCAGCTACAGGAGAAGCACCACTGCATCTCC
TTGGAGTACGCTGAGCTCCAGGATAAAGTGACATCAGCAGAGACCAAAGTGCTAGAGATGGAGACCACAGTAGAGGACCT
GCAGTGGGACATTGAGAAGCTGCACAAGCGTGAGCAAAAGCTCAATAAGCACCTGGCAGAGGCCTTGGAGCAGCTCAACT
CTGGCTACTATGTATCTGGTAGCTCCGCAGGTTTCCAGGGAGGCCAGATCACACTCAGCCTGCAGAAGTTTGAGATGCTG
AATGCGGAGTTAGAGGAAAACCAGTTATTGGCCAACAGCCACATGGCAGAGCTGGAGAAGCTCCAGGTCGAACTTCAGGA
GGCTGTGCGGACCAATGAGCACCTCAAGGTGGCCCTACGCAGTCTTCCTGAGGAGGTGGTACAGGAGACGGAGGAGTACC
AAATGCTGCAGGCCCAGTTCTCACTGCTTTACAATGAGTCTCTGCAAGTGAAGGCCCAGCTAGAGGAGGCCCGGGGACTG
TTGCTGGCCACCAAGAACTCACACCTGATGCACATTGAGCACATGGAGAGCGATGAGTTGGGGCTGCAGAAGAAGTTGCG
TTCAGAGGTTATCCAGATGGAGGACACACTGGCCCAGGTACGCAAGGAGTATGAGATGCTGCGCATCGAGTTTGAACAGA
ACCTGGCCGCCAATGAGCAGGCAGGGCCCATCAACCGTGAGATGCGCCATCTGATCAGCAGCCTTCAAAGTCACAACCAC
CAGCTAAAGGGGGATGCCCAGCGATACAAACGGAAGCTGCGGGAAGTGCAGGCTGAGATTGGCAAGTTCCAGGCCCAGGC
CAGTGGCTCTATGCACTCTATCCCGGAGGACTCTGGTCTCAGTGCTCCAGACCCAGGGCAAGAAGAGGGTGGGCCAGGCC
CTATTGGTGACCACGAAAGCAGAAAGGAGATGGTTTCAATGCCTGGTGCCGCCATGACTACCTCCTTAGCAAAGATAGAG
GAACTGGTCCCCTTTGAGGAAGATGCCCAGGCCTTAACTCCCAGGGCCCCAGGCCCCTCCTCTTGGGTCCGAGAACCTGA
GCCCAGGCCCCAATGGGAGCTTCAGGAGTGGGAAGGGCCTGGCCTGGGACCCCAATCTATGGCCTCAACATATTCAAGAG
CTGATCGGGAGAAGGCCAAGGTGGAGGAGCCCAAGAGGAAAGAGTCCGAATTTCTCAAATGTCTCCGAGCAGAGCTCAAG
AAGGCCCAGGAAAGCCAGAAGGAGATGAAGCTGCTGCTTGACATGTACAAAACAGTGCCTAAGGAGCAACGAGATAAGGT
GCAGCTTATGGCAGCTGAATGCAAGATCAAGGCCGAGGTCAATGAGCTACGGAATCACATCCGGGAATTGGAGGAGAGAG
ATCAGAGGGAGAGGAAGAAGATTGCAGACGAGGATGCCATGCGGCGCATTCGGCAGGCAGAGGAACAGATAGAACATCTG
CAGCGCAAGTTGGGTGCCACCAAGCAGGAGGAGGAGGCTCTGCTGTCAGAGATGGATGTGACAGGTCAGGCTTTTGAGGA
CATGCAAGAGCAAAATAGGCGGCTGCTACAGCAGTTGCGGGAAAAGGATGATGCCAACTTTAAGCTGATGTCAGAGCGGA
TCAAGGCCAACCAGATTCACAAGCTGCTGCGAGAGGAGAGGGATGAGCTGGGCGAGCAGGTTCTTTGCCTCAAGTCTCAG
GTGGATGCCCAGCTGCTGACCATGCAGAAGCTGGAGGAAAAAGAGCAGGCCTTGCAGGGCAGCCTTGGAGGTGTGGAAAA
GGAGCTGATGCTATGCAACCAGGCCCTGGAGCTCAGTAAGAGGAAGGCTGTGGAATCAGCCCAGCTGGCAGAAGACCTGA
AGGTGCAGCTGGAGCATGTGCAGACACGGCTGCGAGAGAGCCAGCCTTGCTTGGCAGAGAGCCGTGCTGCTCGAGAGAAA
GAGAGCTTCAACCTCAAGAGGGCTCAGGAGGACATCTCACGGCTGCGGCGCAAGCTGGAGAAGCAGAGGAAGGTGGAGGT
TTATGCAGATGCTGATGAAATCCTCCAGGAGGAGATCAAGGAGTACAAGGCGCGGTTGACCTGCCCCTGCTGTAACACAC
GCAAGAAGGATGCGGTGCTTACCAAGTGCTTCCACGTTTTCTGCTTCGAGTGTGTGCAGGGCCGCTATGAGGCCCGCCAG
AGGAAGTGCCCCAAGTGCAATGTGGCCTTTGGTGCCCATGACTTCCACCGTATCTACATCAGCTGA

Alignment

ORF - retro_mluc_182 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.12 %
• Parental protein coverage: 55.5 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIG
          .L.....Q........R.E.E......EQ....N................L.......K...........
Retrocopy KLRSEVIQMEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQSHNHQLKGDAQRYKRKLR

Parental  KLRAQASGSTHSVPNLGHS--EDSGLSAPAVGKEEGGPGPVGAHETRKEIASVPVAAMATSSAKKEELVP
          ...A.............HS..EDSGLSAP..G.EEGGPGP.G.HE.RKE..S.P.AAM.TS.AK.EELVP
Retrocopy EVQAEIGKFQAQASGSMHSIPEDSGLSAPDPGQEEGGPGPIGDHESRKEMVSMPGAAMTTSLAKIEELVP

Parental  SEEDAQALTPGSQGPSSRGREPEARPKRELREREGPGLGSQSIASALSRADREKAKVEEAKRKESELLKG
          .EEDAQALTP...GPSS..REPE.RP..EL.E.EGPGLG.QS.AS..SRADREKAKVEE.KRKESE.LK.
Retrocopy FEEDAQALTPRAPGPSSWVREPEPRPQWELQEWEGPGLGPQSMASTYSRADREKAKVEEPKRKESEFLKC

Parental  LRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADE
          LRAELKKAQESQKEMKLLLDMYK..PKEQRDKVQLMAAE.K.KAEV.ELR..IRELEERD.RE.KKIADE
Retrocopy LRAELKKAQESQKEMKLLLDMYKTVPKEQRDKVQLMAAECKIKAEVNELRNHIRELEERDQRERKKIADE

Parental  DALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERI
          DA.RRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQN.RLLQQLREKDDANFKLMSERI
Retrocopy DAMRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNRRLLQQLREKDDANFKLMSERI

Parental  KANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAV
          KANQIHKLLREE.DELGEQVL.LKSQVDAQLLT.QKLEEKE.ALQGSLGGVEKEL.L..QALEL.KRKAV
Retrocopy KANQIHKLLREERDELGEQVLCLKSQVDAQLLTMQKLEEKEQALQGSLGGVEKELMLCNQALELSKRKAV

Parental  EAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEI
          E.AQLAEDLKVQLEHVQTRLRE.QPCLAESRAAREKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEI
Retrocopy ESAQLAEDLKVQLEHVQTRLRESQPCLAESRAAREKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEI

Parental  LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYIS
          LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECV.GRYEARQRKCPKCN.AFGAHDFHR.YIS
Retrocopy LQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVQGRYEARQRKCPKCNVAFGAHDFHRIYIS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_182 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010964	1 retrocopy	retro_mluc_182 ,
Sorex araneus	ENSSARG00000009524	1 retrocopy	retro_sara_299,