RetrogeneDB ID: retro_mluc_1824

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429922:1514077..1514523(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025714
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016031
• Aliases: None
• Description: None

Sequence

>retro_mluc_1824
ATGGACTCAGCCCCCCAGGGCTATGAGCTCAACAGTGACCTGCGGTTGGACTTGCCCAGTGCCCCGGACGCCCCACCAAC
ACGCTGGGGCAGGAACAGGCCCATCAAAGTGAACCATTACACCAACAAGAAGAGTACCGCAGAGAGCATGCTGGACATCA
CCCTGCTGATGGCCAACACCTTGCAGCCGAAGGCAGTCATCCACCAGGGCCCCGGCTTTGGCTTCTTTGTGCCCCTGGTG
GTGCTCATCTCCACCTTCCTGGTGCTGCAGATCTGCGTGGGCGTGCTGCTCATCTTCCTGGTCAGGTACAACCTCAACAA
CCCAGCCAAGCACACCAAGTTGACTTCCTCAACAGCCTGGCCACCAGCCTCTTCTTCATCATCGTCCTGGTCAACATCTT
CATCACGGCCTTCGGCGTCCAGAAGCCTGTGGTGGACCTGGTGCCC

Alignment

ORF - retro_mluc_1824 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.71 %
• Parental protein coverage: 98.69 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MDSTPEGSELNGDLRPDSPPTDCPSPQPTRWGRNRLINVNHYANKKSAAESMLDIALLMANASQLKAVID
          MDS.P.G.ELN.DLR.D.P....P...PTRWGRNR.I.VNHY.NKKS.AESMLDI.LLMAN..Q.KAVI.
Retrocopy MDSAPQGYELNSDLRLDLP--SAPDAPPTRWGRNRPIKVNHYTNKKSTAESMLDITLLMANTLQPKAVIH

Parental  QGPSFGFYVPLVALITISLVLQISVGVLLIFLVRYDLNNPAKHAKL-DFLNNLATGLVFIIVVVNIFITA
          QGP.FGF.VPLV.LI...LVLQI.VGVLLIFLVRY.LNNPAKH.KL.DFLN.LAT.L.FIIV.VNIFITA
Retrocopy QGPGFGFFVPLVVLISTFLVLQICVGVLLIFLVRYNLNNPAKHTKL<DFLNSLATSLFFIIVLVNIFITA

Parental  FGVRMPMAAWEP
          FGV..P.....P
Retrocopy FGVQKPVVDLVP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1824 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000011204	1 retrocopy	retro_btau_833,
Myotis lucifugus	ENSMLUG00000016031	1 retrocopy	retro_mluc_1824 ,