RetrogeneDB ID: retro_mluc_183

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429851:4592206..4593136(+)
• Located in intron of: ENSMLUG00000000950

Retrocopy information

• Ensembl ID: ENSMLUG00000007657
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000004319
• Aliases: None
• Description: None

Sequence

>retro_mluc_183
ATGGTCTCGGACGAAGATGAATTGAATCTTCTAGTTATTATAGTTGATACCAACCCAATCTGGTGGGGGAAGCAAGCATT
AAAGGAATCCCAGTTCACGTTGTCGAAATGCATAGACGCAGTGATGGTGCTGGGAAATTCTCACTTATTCATGAACCGGT
CCAACAGGCTCGCGGTGATAGCGAGTCACATTCAGGAAAGCCGATTCCTGTACCCTGGGAAGAACGGGCGACTCGGAGAC
TTCTTCGGGGACCCTGGCAACCCTGCTTCTGAATATAACCCCTCGGAGAGCAAAGACGGGAAGTACGAGTTGTTGACAGC
AGCAAATGAAGTCATTGTGGAGGAGATCAAGGATCTGATGACCAAGAGTGACATAAAGGGGGAGCACACAGAGACTCTGC
TGGCAGGGTCCCTCGCCAAAGCTCTGTGCTACATCCACAGGATGAACAAGGAGGTTAAAGACAACCAGGAGATGAAGTCC
AGGATACTGGTGATCAAGGCCGCGGAAGACAGCGCCCTGCAGTACATGAACTTCATGAACGTCATCTTCGCGGCGCAGAA
GCAGAATATTTTGATCGATGCGTGTGTTTTAGACTCCGATTCAGGACTCCTCCAACAGGCTTGTGACATCACAGGGGGCC
TGTACTTGAAGGTGCCACAGATGCCCTCCCTCCTGCAGTACCTGCTGTGGGTCTTTCTTCCTGATCAGGACCAGAGATCT
CAGTTAACCCTCCCTCCCCCCATTCACGTGGACTACCGGGCCGCCTGCTTCTGCCACCGCAACCTCATCGAGATCGGCTA
CGTCTGTTCTGTGTGCTTGTCGATATTCTGCAACTTCAGCCCCATCTGCACCACCTGCGAGACGGCCTTTAAGATTTCTC
TGCCTCCCGTGCTGAAGGCCAAGAAAAAGAAACTGAAAGTGTCTGCGTGA

Alignment

ORF - retro_mluc_183 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.06 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LIFSEDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNRLAVIASHIQESRFL
          ....EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNRLAVIASHIQESRFL
Retrocopy MVSDEDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNRLAVIASHIQESRFL

Parental  YPGKNGRLGDFFGDPGNPASEYNPSGSKDGKYELLTAANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAK
          YPGKNGRLGDFFGDPGNPASEYNPS.SKDGKYELLTAANEVIVEEIKDLMTKSDIKG.HTETLLAGSLAK
Retrocopy YPGKNGRLGDFFGDPGNPASEYNPSESKDGKYELLTAANEVIVEEIKDLMTKSDIKGEHTETLLAGSLAK

Parental  ALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDI
          ALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDI
Retrocopy ALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDI

Parental  TGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLTLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFS
          TGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLTLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFS
Retrocopy TGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLTLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFS

Parental  PICTTCETAFKISLPPVLKAKKKKLKVSA
          PICTTCETAFKISLPPVLKAKKKKLKVSA
Retrocopy PICTTCETAFKISLPPVLKAKKKKLKVSA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_183 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000006219	2 retrocopies	retro_chof_1726, retro_chof_2064,
Loxodonta africana	ENSLAFG00000007300	1 retrocopy	retro_lafr_292,
Macropus eugenii	ENSMEUG00000013734	1 retrocopy	retro_meug_558,
Myotis lucifugus	ENSMLUG00000004319	1 retrocopy	retro_mluc_183 ,
Monodelphis domestica	ENSMODG00000023728	1 retrocopy	retro_mdom_1915,
Tupaia belangeri	ENSTBEG00000011048	8 retrocopies	retro_tbel_1645, retro_tbel_1820, retro_tbel_2555, retro_tbel_3550, retro_tbel_3894, retro_tbel_3931, retro_tbel_4065, retro_tbel_4293,
Tarsius syrichta	ENSTSYG00000007444	1 retrocopy	retro_tsyr_1126,
Tursiops truncatus	ENSTTRG00000007259	1 retrocopy	retro_ttru_1357,