RetrogeneDB ID: retro_mluc_1869

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429933:1586649..1587809(+)
• Located in intron of: ENSMLUG00000003390

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARIH2
• Ensembl ID: ENSMLUG00000013946
• Aliases: None
• Description: None

Sequence

>retro_mluc_1869
ATGTCTGTGGACATGAATAGCCAGGGGTCTGACAGTAATGAAGAGGACTGTGACCCAAATTGCAAAGAAGAGGAAGAGGG
CGAGGACCCTGGGGACATAGAGGGCTATTGTGGTAGTAGCCAGCAATGTGGAGCAGCAGGGGCCGATGCCTTTGATCCTG
AGGGAGTACTAGTTCATCTGCTTGACCTACAAGGGGTCTGAGGATGCTCTCAATGAGCACATGACCAGCTTGGCTGTCCT
AAAGGTGTCTCATTCAGTTGCTAAATTTCTATTGGTTATTTCTACTTGCAAGTTGCAGAGATAATGGACAGATACAAGTC
TAATTTGGCTCAGCTGCTCGTTGAGGCTCAAGTTCAACCCGATCCATCGAAACATGTCCCCACAGCCCATCCCCTCACCA
CTGTGCAATGTGTATGCAGTTTGTGTGGAGGGAAAACCTACTCTTGCTGGTCTGCTAGCATCAGTTTTGCTGCAGCTGCT
GGGAGCAGCACTGCTCAGTACTTGTCAAAGATGGGGGTGGGGGTGGGAGTCTCTTGCATGGCTCAGGACTGGCCACTTTG
AACACCAGAGGACTCTTTGTTTCCATTATTGCCCAATGAAGAGCTAAGAGACAAATACAGGTGCTACCTCTTCAGGGACT
ATGTGGACAGTCATTGCCAGCTCCAGCTGTGCCCTGGTGCAGACTGCCCCAAGCTCATCCAGGTGTCAGAGCCCAGAGCT
CGCCAAGTCCAGTGCGATCAGCGCAACGAGGTCTTCTGTTTCAAGTGTCATCAGATGTATCCCACCCCCACAGACTGTGC
CACAATCTGGAAATGGCTCCGGAAGTGTGCCGATGACTCTGAAACAGCCAACTACATTAGTGCTCACACTAAAGACGGTC
CCAAGTGCAACATCTGCATTGAGAAGAACAGAGGCTGCAATCACGTGCAATGCTCCAAGTGTCCATACAGCTTCTGCTGG
ATGTGTCTAGGAGACTGGAAGACCCATGGCAGCGAGGACTCTGAGTGCAGTAGGTATAAGGAGAACCCCAACATCGTCAA
CCAGAGCCAGCAGGCCCAGCCAGGGAGGCCCTCAAGAAATACTTGTTCTACTTTGAAAGGTGGGAAAACCACACCAAGAG
CTTGTAGCTGGAAGCACAGACATACCAGGGGATTCATGAG

Alignment

ORF - retro_mluc_1869 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.32 %
• Parental protein coverage: 79.23 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  MSVDMNSQGSDSNEEDYDPNCEEEEEDEDPGDIEDYYVG-VASDVEQQG-ADAFDPE-EYQFTCLTYKES
          MSVDMNSQGSDSNEED.DPNC.EEEE.EDPGDIE..Y.G.VAS.VEQQG.ADAFDPE.EY.F.CLTYK.S
Retrocopy MSVDMNSQGSDSNEEDCDPNCKEEEEGEDPGDIEG-YCG>VASNVEQQG<ADAFDPE>EY*FICLTYKGS

Parental  EGALNEHMTSLASVLKVSHSVAKLILV-NFHWQVAEILDRYKSNSAQLLVEARVQPSPSKHVPAAHP-PH
          E.ALNEHMTSLA.VLKVSHSVAK..LV..F..QVAEI.DRYKSN.AQLLVEA.VQP.PSKHVP.AHP.PH
Retrocopy EDALNEHMTSLA-VLKVSHSVAKFLLV<YFYLQVAEIMDRYKSNLAQLLVEAQVQPDPSKHVPTAHP<PH

Parental  HCAVCMQFVRKEHLLSLACQHQFCRSCWEQHCSVLVRD-GVGVGVSCMAQDCPLRTPEDFVFPLLPNEEL
          HCA.CMQFV..E.LL.L.C.HQFC.SCWEQHCSVLV.D.GVGVGVSCMAQD.PL.TPED..FPLLPNEEL
Retrocopy HCAMCMQFVWRENLLLLVC*HQFCCSCWEQHCSVLVKD>GVGVGVSCMAQDWPL*TPEDSLFPLLPNEEL

Parental  RDKYRRYLFRDYVESHYQLQLCPGADCPMVIQVQEPRARRVQCSRCSEVFCFKCRQMYHAPTDCATIRKW
          RDKYR.YLFRDYV.SH.QLQLCPGADCP..IQV.EPRAR.VQC....EVFCFKC.QMY..PTDCATI.KW
Retrocopy RDKYRCYLFRDYVDSHCQLQLCPGADCPKLIQVSEPRARQVQCDQRNEVFCFKCHQMYPTPTDCATIWKW

Parental  LTKCADDSETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKEN
          L.KCADDSETANYISAHTKD.PKCNICIEKN.GCNH.QCSKC...FCWMCLGDWKTHGSE..ECSRYKEN
Retrocopy LRKCADDSETANYISAHTKDGPKCNICIEKNRGCNHVQCSKCPYSFCWMCLGDWKTHGSEDSECSRYKEN

Parental  PDIVNQSQQAQ-AREALKKYLFYFERWENHNKSLQLEAQTYQRIHE
          P.IVNQSQQAQ.AREALKKYLFYFERWENH.KSL.LEAQTYQ.IHE
Retrocopy PNIVNQSQQAQ<AREALKKYLFYFERWENHTKSL*LEAQTYQGIHE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1869 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013035	1 retrocopy	retro_amel_1021,
Callithrix jacchus	ENSCJAG00000003305	1 retrocopy	retro_cjac_1106,
Homo sapiens	ENSG00000177479	1 retrocopy	retro_hsap_1876,
Gorilla gorilla	ENSGGOG00000017134	1 retrocopy	retro_ggor_1373,
Myotis lucifugus	ENSMLUG00000013946	1 retrocopy	retro_mluc_1869 ,
Mustela putorius furo	ENSMPUG00000014344	1 retrocopy	retro_mputfur_610,
Mus musculus	ENSMUSG00000064145	1 retrocopy	retro_mmus_795,
Nomascus leucogenys	ENSNLEG00000006710	1 retrocopy	retro_nleu_1228,
Oryctolagus cuniculus	ENSOCUG00000017699	1 retrocopy	retro_ocun_1838,
Pongo abelii	ENSPPYG00000013890	1 retrocopy	retro_pabe_1557,
Pan troglodytes	ENSPTRG00000014902	1 retrocopy	retro_ptro_1259,
Ictidomys tridecemlineatus	ENSSTOG00000001766	1 retrocopy	retro_itri_1047,