RetrogeneDB ID: retro_mluc_1956

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429961:426798..427294(-)
• Located in intron of: ENSMLUG00000015363

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MOSPD3
• Ensembl ID: ENSMLUG00000010017
• Aliases: None
• Description: None

Sequence

>retro_mluc_1956
AGAGTCCTGTGCACAGCACCTGCCGAGTACACAGTGTTTGACGCAGAAGGATATGTGAAGCCTCAGTCCTGCGTTGACAT
TGTGATTCACCACCTGGCCCCGTGTGCCAGCCACTGTATGTCCAGGACCACTTCCGCATTGAGCTGTCTGAGGAGGGAGC
TGAGGCTGAGTGTTGGGGTGCAAGGACTTCACCTCGGTTTTGAGGGCCCCAGCCTACCGAACTTCAGGGACATCCTGACC
TAACGTCCCTCCTGGGCCTCCTTTCTGGACAGCACCACCCATGACCAGACACCTACCTGAGAAATCCCGCCCACAGCTGG
CTACCAGCTCCTTCCTCCTGCTCTTGCTGACTGGCATAGTCTCGGTGGCCTTCCTGCTGCTCCCACTCTAGGATGAACTG
GGTAGCCAGTTGCCCCAAATCCTGCATGTCTCCCTGGGACAAAAGTTGGTGGTGGCCTACATCTTGGGCCTCCTTACCAT
GGTCTTTCTCCATACC

Alignment

ORF - retro_mluc_1956 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.82 %
• Parental protein coverage: 71.49 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RVLCTAPDKYTVFDAEGYVKPHSCIDIVIRHVAPIASH-YDVQDRFRIELFEEGAE-GRVLGRKDITSVL
          RVLCTAP..YTVFDAEGYVKP.SC.DIVI.H.AP.ASH...VQD.FRIEL.EEGAE.G.VLG.KD.TSVL
Retrocopy RVLCTAPAEYTVFDAEGYVKPQSCVDIVIHHLAPCASH<LYVQDHFRIELSEEGAE<G*VLGCKDFTSVL

Parental  RAPAYPLELQGQPDSTPHPGPPSWTAPPTTRHLPEKSHPQLATSSFLLFLLTGIVSVAFLLLPLQDELGS
          RAPAY.......P...P..GPP.WTAPP.TRHLPEKS.PQLATSSFLL.LLTGIVSVAFLLLPL.DELGS
Retrocopy RAPAYRTSGTS*PNVPP--GPPFWTAPPMTRHLPEKSRPQLATSSFLLLLLTGIVSVAFLLLPL*DELGS

Parental  QLPQILHVSLGQKLVAAYILGLLTMVFIRT
          QLPQILHVSLGQKLV.AYILGLLTMVF..T
Retrocopy QLPQILHVSLGQKLVVAYILGLLTMVFLHT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1956 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000026246	1 retrocopy	retro_btau_1854,
Myotis lucifugus	ENSMLUG00000010017	1 retrocopy	retro_mluc_1956 ,
Oryctolagus cuniculus	ENSOCUG00000005694	1 retrocopy	retro_ocun_181,
Rattus norvegicus	ENSRNOG00000001396	1 retrocopy	retro_rnor_524,