RetrogeneDB ID: retro_mluc_2007

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429984:522768..523549(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DCK
• Ensembl ID: ENSMLUG00000005844
• Aliases: None
• Description: None

Sequence

>retro_mluc_2007
ATGGCCACCCCACCCAAGAGGAGCTGCCCCTCTCCCACGATCACCTCTGAGAGAACCCACATCAAGAAAATTTCCATCGA
AAGGAACATCACTGCAGGGAAGTCAACATTTGTGAATATCCTTAAACAAGTCTGCGAGGATTGGGAAGTGGTTCCTGAAC
CTGTTGCCAGAAGGTGCAATGTTCAAATTACTCAAGATGAATTTCAGGAACTGACGACATCTCAGAAAAGTGGTGGGAAA
TGTTCTTCAGATGGTGTATGAGAAACCTGAGCAATGGTCTTTTACCTTCCAGTCATATGCCTGCCCCAGTCGCATACGAG
CTCAGCTTGCCTCTCTCAATGGCAAGCTCAAAGATGTGGAGAAACCTGTATTATTTTTTCAACGATCTGTATATAGTGAC
AGGTATATTTTTGCATCTAGTTTGTATGAATCTGAATATATGAATGAAACAGAGGGGACAATTTATCAGGACTGGCATGA
CTGGAAGAACAACCAATTTGGCCAAAGCCTTGAACTGGATGGAATCATTTATCTTCGAGCTAGTCCAGAGAAATGCTTGA
GTACAATATATATACGGGGAAGAAATGAGGAATAAGGCATTCCTCTTGAATATTTAGAGAAGCTTCACTATAAGCATGAA
AGCTAGCTCCTGTACAGAACACTGAAAACCAACTTTGATTATCTACAAGAAGTGCCTATCTTAATACTGGATGTTAATGA
AGACTTTAAAGACAAACACGACAGTCTGGTTGAATAGGTCAAAGAATTTTTGAGCACTTTG

Alignment

ORF - retro_mluc_2007 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.12 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MATPPKRSCPSPATSSEGTRIKKISIEGNIAAGKSTFVNILKQVCQDCEVVPEPIARWCNVQSTQDEFQE
          MATPPKRSCPSP...SE.T.IKKISIE.NI.AGKSTFVNILKQVC.D.EVVPEP.AR.CNVQ.TQDEFQE
Retrocopy MATPPKRSCPSPTITSERTHIKKISIERNITAGKSTFVNILKQVCEDWEVVPEPVARRCNVQITQDEFQE

Parental  LTTSQKSGG-NVLQMMYEKPERWSFTFQAYACLSRIRAQLASLNGKIKDAEKPVLFFERSVYSDRYIFAS
          LTTSQKSGG.NVLQM.YEKPE.WSFTFQ.YAC.SRIRAQLASLNGK.KD.EKPVLFF.RSVYSDRYIFAS
Retrocopy LTTSQKSGG>NVLQMVYEKPEQWSFTFQSYACPSRIRAQLASLNGKLKDVEKPVLFFQRSVYSDRYIFAS

Parental  NLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLRASPEKCLSRIYLRGRNEEQGIPLEYLEKLH
          .LYESE.MNETE.TIYQDWHDW.NNQFGQSLELDGIIYLRASPEKCLS.IY.RGRNEE.GIPLEYLEKLH
Retrocopy SLYESEYMNETEGTIYQDWHDWKNNQFGQSLELDGIIYLRASPEKCLSTIYIRGRNEE*GIPLEYLEKLH

Parental  YKHESWLLHRTLKTNFDYLQEVPVLILDVNEDFKDKHDSLVEKVKEFLSTL
          YKHES.LL.RTLKTNFDYLQEVP.LILDVNEDFKDKHDSLVE.VKEFLSTL
Retrocopy YKHES*LLYRTLKTNFDYLQEVPILILDVNEDFKDKHDSLVE*VKEFLSTL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2007 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000022606	1 retrocopy	retro_fcat_1830,
Myotis lucifugus	ENSMLUG00000005844	1 retrocopy	retro_mluc_2007 ,
Mus musculus	ENSMUSG00000029366	1 retrocopy	retro_mmus_2735,
Oryctolagus cuniculus	ENSOCUG00000001265	1 retrocopy	retro_ocun_1247,
Pan troglodytes	ENSPTRG00000016139	1 retrocopy	retro_ptro_427,
Pteropus vampyrus	ENSPVAG00000004341	1 retrocopy	retro_pvam_32,
Rattus norvegicus	ENSRNOG00000003296	1 retrocopy	retro_rnor_1026,
Xenopus tropicalis	ENSXETG00000018331	1 retrocopy	retro_xtro_9,