RetrogeneDB ID: retro_mluc_2017

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429989:821101..821350(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ERICH2
• Ensembl ID: ENSMLUG00000010055
• Aliases: None
• Description: glutamate-rich 2 [Source:HGNC Symbol;Acc:44395]

Sequence

>retro_mluc_2017
TTCCTGAAAGCAGAAATGGCCCAAGACTATCATTAGGCTAAATAATTATGTCAGATGATCCTAATCTATGTACCAGAAAA
TCCTGAAGCCAAGGAGTTTTTCTCACTTATTGAAGAAATGTTGCTGATGGAGAAAGCTCAAAATCTTCAGGAACATAATC
AAGGTAGTAAAGAAGACAGCAGCAGAGATAGTGATGGAGAAAGCAGTGAGGAGCTAAGTAAAGAAAGCTCTGATGAATGT
GAAGTTGGG

Alignment

ORF - retro_mluc_2017 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.9 %
• Parental protein coverage: 58.04 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FLRAEMSQDYHLAKKLCQMILIYEPENPEAKEFLVLIEEMLLMEKAQNREEDGEDSEEDSSGESEGESSE
          FL.AEM.QDYH.AK.LCQMILIY.PENPEAKEF..LIEEMLLMEKAQN..E....S.EDSS..S.GESSE
Retrocopy FLKAEMAQDYH*AK*LCQMILIYVPENPEAKEFFSLIEEMLLMEKAQNLQEHNQGSKEDSSRDSDGESSE

Parental  EPSEESSDECEDG
          E.S.ESSDECE.G
Retrocopy ELSKESSDECEVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2017 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000011259	1 retrocopy	retro_ecab_758,
Myotis lucifugus	ENSMLUG00000010055	1 retrocopy	retro_mluc_2017 ,