RetrogeneDB ID: retro_mluc_2049

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430003:1936063..1936946(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029220
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000006411
• Aliases: None
• Description: Cellular tumor antigen p53 [Source:UniProtKB/TrEMBL;Acc:G1P6Z4]

Sequence

>retro_mluc_2049
GCTCCAATGGAGGAGGCACAGTCAGAACTCTTCATGGGGCCCCTTTGGAGTTAAGAGACATTGTCGGACTGGCAAAAACT
ACATCATGAAAACAATGTTCTGACCTCTGAAGTATCCCTGGTAATGGATGAACTGCTGCTGTCCCCAGGCCTTGTAACCT
GTCTGGACCAAGGTTCAAATGAAGCCCCCAGTATGCCAGCAACTCCTGCACCAGCAGCTGATAACCCAGCACCAGCCCCC
TTCTGGCCCTTGTCATCCTTTGTCCCTTCCCAGAAGACCTACCCTGACAGCTATGGTGTCTGTTTAGGATTCCTGAATTC
TGGGACAGCAGGTCTGTAAACTGCACATACTTCTCTACCCTCAATTTATTGTTTTGCCAGTTAGCCAACACTGGCCCCCT
GCAAATGTAGGTCAGCTCCCCGCCCCCACTCGGTACCTGTGTCTGTGCCATGGCCATCTATGAGAAGTTCAGGTACGTGA
CAGAGGTCATGAGGCACTGTTCCTACCCTGTATGTTGCTCTGACAATAGCGATAATCCGGCCCCTCCTCAGCATCTTATC
TGGGTGGAAGGAAATTTATGTGCTGAGTATTTGCACAACAAAACTACATTTCAACATAGTGTGGATATGCCCTATGAGCC
ACCTGATGTGGACTCTGACTGTACCATCATTCGCTACAACTTCATGTGTAACGGCTCCTACATGGGAGACATGACTGGCA
GCCCATCCTCATCATTATCACTCTGAAAGACTCCAGTGGTCATCTGCTAGAACAGAACAGCTTTGAGATGTGTGCTTGCC
CCTGTCCTGGGAGAGACCAGAACTCAGAAGAAGAAAATTTCCACAAGAAAGAAAATTTTTTACTCAAGCAGCCCACTGGG
AGC

Alignment

ORF - retro_mluc_2049 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.89 %
• Parental protein coverage: 75. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AAMDDQQPEVMDPPL-SQETFSDLWNLLHDNDLNPEDSQAVGGLGCMPFDLEDCLANGPDEASSMAATPA
          A.M...Q.E....PL.S.ET.SD...L.H.N.........V.........L..CL..G..EA.SM.ATPA
Retrocopy APMEEAQSELFMGPLWS*ETLSDWQKLHHENNVLTSEVSLVMDELLLSPGLVTCLDQGSNEAPSMPATPA

Parental  PAAAVPAPATPWTLSSSVPSPKTYPGSYGFRLEFLKSGTA-KSVTCTYSPMLNKLFCQMAKTCPVQLWVN
          PAA..PAPA..W.LSS.VPS.KTYP.SYG..L.FL.SGTA..SV.CTY...LN.LFCQ.A.T.P.Q..V.
Retrocopy PAADNPAPAPFWPLSSFVPSQKTYPDSYGVCLGFLNSGTA<RSVNCTYFSTLNLLFCQLANTGPLQM*VS

Parental  SPPPLSSRVRAMAIYKKSEHMTEVVRRCPHHERCSDYSDGLAPPHHLIRVEGNLRAEYLDDPNTFRHSVV
          SPPPL...V.AMAIY.K....TEV.R.C.....CSD.SD..APP.HLI.VEGNL.AEYL....TF.HSV.
Retrocopy SPPPLGTCVCAMAIYEKFRYVTEVMRHCSYPVCCSDNSDNPAPPQHLIWVEGNLCAEYLHNKTTFQHSVD

Parental  VPYEPPEVGSDYATIHYNFMCNSSCMGGM-NRRPILTIITLEDSNGNLLGRNSFEVRICACPGRDRRTEE
          .PYEPP.V.SD...I.YNFMCN.S.MG.M....PIL.IITL.DS.G.LL..NSFE...C.CPGRD...EE
Retrocopy MPYEPPDVDSDCTIIRYNFMCNGSYMGDM<DWQPILIIITLKDSSGHLLEQNSFEMCACPCPGRDQNSEE

Parental  ENFRKKGEPSPKQPPGS
          ENF.KK.....KQP.GS
Retrocopy ENFHKKENFLLKQPTGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2049 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013135	2 retrocopies	retro_meug_1464, retro_meug_599,
Myotis lucifugus	ENSMLUG00000006411	3 retrocopies	retro_mluc_2049 , retro_mluc_2050, retro_mluc_452,
Monodelphis domestica	ENSMODG00000007271	1 retrocopy	retro_mdom_372,
Rattus norvegicus	ENSRNOG00000010756	1 retrocopy	retro_rnor_1411,
Sarcophilus harrisii	ENSSHAG00000015510	1 retrocopy	retro_shar_250,