RetrogeneDB ID: retro_mluc_2063

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430009:1126863..1129269(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026502
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CDC5L
• Ensembl ID: ENSMLUG00000012803
• Aliases: None
• Description: None

Sequence

>retro_mluc_2063
ATGCCTCGAATTATGATTAAAGGGGGCGTGTGGAGGAATACCGAGGATGAAATTCTTAAAGCAGCGGTAATGAAATATGG
GAAAAACCAGTGGTCTAGGATTGCCTCACTGCTGCATAGAAAATCAGCAAAGCAATGCAAAGCCAGATGGTATGAGTGGC
TTGATCCAAGCATTAAGAAAACAGAGTGGTCCAGAGAAGAAGAGGAAAAACTCTTACACTTGGCCAAGTTGATGCCAACT
CAGTGGAGAACCATCGCTCCAATCATTGGAAGAACAGCTGCCCAGTGCTTGGAACACTATGAATTTCTTCTGGATAAAGC
AGCCCAAAGAGACAATGAAGAGGAAACAACAGATGATCCACGGAAACTTAAACCTGGAGAAATAGATCCAAATCCAGAAA
CAAAACCAGCACGGCCTGATCCAATCGATATGGACGAGGATGAACTTGAGATGCTTTCTGAAGCTAGAGCTCGCCTGGCT
AATACTCAGGGAAAGAAGGCCAAGAGGAAAGCAAGAGAGAAACAGTTGGAAGAAGCCAGACGTCTTGCTGCCCTCCAAAA
GAGAAGAGAACTTCGAGCAGCTGGCATAGAAATTCAGAAGAAGAGAAAAAGGAAGAGAGGAGTTGATTATAATGCTGAAA
TCCCATTTGAAAAAAAGCCTGCTCTTGGTTTCTATGATACTTCAGCAGAAAACTACCAGGCTCTTGATGCAGATTTTAGG
AAGTTAAGGCAACAGGATCTTGATGGCGAGCTAAGATCTGAAAAAGAAGGAAGAGAGAGAAAAAAAGACAAGCAGCATTT
GAAAAGGAAAAAAGAATCTGATTTACCATCAGCTATTCTTCAAACAAGTGGTGTTTCTGAATTTACTAAAAAGAGAAGCA
AACTAGTACTTCCTGCCCCTCAGATTTCAGATGCAGAACTCCAGGAAGTTGTGAAAGTAGGCCAAGCAAGTGAACTTGCA
CGTCAAACAGCTGAGGAATCTGGCATAACAAACTCGGCTTCCAGTACTCTTTTGTCTGAGTACAATGTCACCAACAACAG
GGTTGCTTTTAGAACACCACGAACGCCAGCTTCTCAGGACAGAATTCTTCAGGAAGCCCAGAACCTCATGGCCCTGACCA
ATGTGGACACCCCATTAAAAGGTGGACTTAACACACCTTTGCACGAGAGTGACTTCTCAGGTGTGACTCCGCAGCAGCAG
GTTGTACAGACTCCAAACACAGTTCTTTCAACCCAATTCAGGACTCCCTCTCATGGATCGGAAGGGCTGACTTCCCAGAG
TGGGACAACTCCCAAACCAGTTGTTAACTCCACCCCGGGTAGAACTCCTCTTCGAGACAAGTTAAACATTAATCCGGAGG
ATGGAATGGCAGACTACAGTGATCCCTCTTATGTGAAGCAGATGGAAAGAGAGTCTCGTGAACACCTTCGTTTAGGGTTG
ATGGGTCTTCCTGCCCCTAAGAATGACTTTGAAATTGTTCTACCAGAAAATGCTGAGAAGGAGCTGGAAGACCGTGAAAT
AGATGATACATACATTGAAGATGCTGCTGACGTGGATGCCCGGAAGCAGGCCATACGAGATGCAGAGCGTGTGAAGGAAA
TGAAGCGAATGCATAAAGCTGTCCAGAAAGATCTTCCAAGACCATCAGAAGTAAATGAAAGTATTCTAAGACCCTTAAAT
GTAGAACCGCCGTTAACAGATTTACAGAAAAGTGAAGAACTAATCAAAAAAGAAATGATCACAATGCTTCATTATGACCT
TCTACATCACCCTTATGAACCATCTGTAAATAAAACAGGAAAAACTGTAGGATCTGCTACCAATAATTCAGAGCACATTG
CCTATCTGGAACATAACCTTTATGAAAGGTTTACTGAAGAAGAGTTGAAAAAGGCCCACGATGTTCTGGTACAGGAGATG
GAAGTGGTAAAACAAGGTATGAGCCATGGAGAACTCTCAAGTGAAGCTTATGACCAGGTGTGGGAAGAATGCTACAGTCA
AGTTCTGTATCTCCCTGGGCAGAGGCGCTACACACGGGCCAACCTAGCAAGCAAAAAGGACAGAATTGAGTCACTTGAAA
AGAGGCTTGAGATAAACAGGGGTCACATGGCAAGAGAAGCCAAGAGAGCTGCAAAGATGGAAAAGAAGATGAAAATTTTG
CTTGGAGGTTACCAGTCTCGTGCTATGGGGCTCACGAAACAATTGAATGACTTATGGGACCAAATTGAGCAGGCTTACTT
AGAGTTATGCACTTTTGAAGAACTCAAGAAACACGAAGAATCTGCGATTGCCCGGAGGCTAGAGTGTCTAAAAGAAGAAG
TACAGCGACAACAGGAAAGAGAAAAGGAGCTTCAGCAAAGATATGCTGATTTGTTGCTGGAGAAAGAATCTTTATAGTCC
AAAATG

Alignment

ORF - retro_mluc_2063 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.65 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEK
          MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEK
Retrocopy MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEK

Parental  LLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDNEEETTDDPRKLKPGEIDPNPETKPARPD
          LLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDNEEETTDDPRKLKPGEIDPNPETKPARPD
Retrocopy LLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDNEEETTDDPRKLKPGEIDPNPETKPARPD

Parental  PIDMDEVDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKKKRGVD
          PIDMDE.DELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRK.KRGVD
Retrocopy PIDMDE-DELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVD

Parental  YNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKKDKQHLKRKKESDLPSAI
          YNAEIPFEKKPALGFYDTS.ENYQALDADFRKLRQQDLDGELRS....................DLPSAI
Retrocopy YNAEIPFEKKPALGFYDTSAENYQALDADFRKLRQQDLDGELRSXXXXXXXXXXXXXXXXXXXXDLPSAI

Parental  LQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEIARQTAEESGITNSASSTLLSEYNVTNNSIA
          LQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASE.ARQTAEESGITNSASSTLLSEYNVTNN..A
Retrocopy LQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASELARQTAEESGITNSASSTLLSEYNVTNNRVA

Parental  LRTPRTPASQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSHG
          .RTPRTPASQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQ.QVVQTPNTVLST.FRTPSHG
Retrocopy FRTPRTPASQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTQFRTPSHG

Parental  SEGLTPRSGTTPKPVVNSTPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLMGLPAPKND
          SEGLT..SGTTPKPVVNSTPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLMGLPAPKND
Retrocopy SEGLTSQSGTTPKPVVNSTPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLMGLPAPKND

Parental  FEIVLPENAEKELEDREIDDTYIEDAADVDARKQAIRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPL
          FEIVLPENAEKELEDREIDDTYIEDAADVDARKQAIRDAERVKEMKRMHKAVQKDLPRPSEVNE.ILRPL
Retrocopy FEIVLPENAEKELEDREIDDTYIEDAADVDARKQAIRDAERVKEMKRMHKAVQKDLPRPSEVNESILRPL

Parental  NVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSANKKGKTVGFATNNSEHVAYLEHNPYEKFAKEEL
          NVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPS.NK.GKTVG.ATNNSEH.AYLEHN.YE.F..EEL
Retrocopy NVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSVNKTGKTVGSATNNSEHIAYLEHNLYERFTEEEL

Parental  KKAQDVLVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPGQSRYTRANLASKKDRIESLEKRLEIN
          KKA.DVLVQEMEVVKQGMSHGELSSEAY.QVWEECYSQVLYLPGQ.RYTRANLASKKDRIESLEKRLEIN
Retrocopy KKAHDVLVQEMEVVKQGMSHGELSSEAYDQVWEECYSQVLYLPGQRRYTRANLASKKDRIESLEKRLEIN

Parental  RGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAYLELRTFEELKKHEDSAIPRRLEC
          RGHM..EAKRAAKMEKKMKILLGGYQSRAMGL.KQLNDLWDQIEQAYLEL.TFEELKKHE.SAI.RRLEC
Retrocopy RGHMAREAKRAAKMEKKMKILLGGYQSRAMGLTKQLNDLWDQIEQAYLELCTFEELKKHEESAIARRLEC

Parental  LKEDVQRQQEREKELQQRYADLLLEKESLKSKM
          LKE.VQRQQEREKELQQRYADLLLEKESL.SKM
Retrocopy LKEEVQRQQEREKELQQRYADLLLEKESL*SKM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2063 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012803	1 retrocopy	retro_mluc_2063 ,
Mus musculus	ENSMUSG00000023932	10 retrocopies	retro_mmus_604, retro_mmus_605, retro_mmus_675, retro_mmus_676, retro_mmus_677, retro_mmus_678, retro_mmus_679, retro_mmus_680, retro_mmus_681, retro_mmus_682,