RetrogeneDB ID: retro_mluc_207

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430121:88687..91072(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024966
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000013437
• Aliases: None
• Description: None

Sequence

>retro_mluc_207
TACCCTTTGGTACTTGTTATTTGGACCCGCTTAAGGAGTCTGATTGATAGGATCAACTGGCAGCAGAAAATGAAAAGTAG
TGTGGCACAGATAAAACATTCTTCAGGTCATGACAGAAGGGAAAACAATAGTTCATATCAGAGGACCATCTCTCCAGAAG
ACAGATATGCAAAACAAGAAAGATCCCCACGGGATAGAGATTACTTTGGGTACAGCAGGTCAGACAATGAGCGTTCAAGA
AGAGGACGTTCTTATGATGACAGCATGGAGTCGCAAAGTAGGGACCGAGAGAAACTCAGAGAAAGAGAAAGAGATGTGGA
TCGGAAAAGGTACCGGAAATCTTCATCGCCTGGGAGAAGCCCAGAACCATCGGTAACCCAAAGTTCCTCTGCTCAGGATG
AGCCTACTGCAAAGAAGAAGAAAGATGAGCTGGATCCTCTTCTTACTCGTACTGGTGGAGCATATATTCCTCCTGCAAAG
CTCAGGATGATGCAAGAACAGATCACAGATAAAAACAGCTTAGCATACCAGAGGATGAGCTGGGAAGCTCTAAAGAAGTC
AATTAATGGTCTTATCAACAAAGTCAACATTTCTAATATAGGTATTATTATTCAAGAACTCCTTCAAGAAAACATAGCTA
GAGGGAGAGGCCTGCTGTCCAGATCTGTTTTGCAAGCACAGAGTGCTTCTCCAATCTTCACCCATGTTTATGCAGCTTTA
GTGGCTATTATCAACTCAAAATTTCCACAAATCGGAGAATTAATCCTCAAGAGGTTAATTCTTAATTTTCGGAAAGGTTA
TCGAAGAAATGATAAGCAACTTTGTCTGACTGCTTCAAAATTTGTGGCACATCTTATTAACCAAAGTGTGGTACATGAAG
TTTTATGCTTAGAGATGCTCACTTTGCTCCTGGAAAGACCAACAGATGATAGTGTTGAAGTAGCTATTGGTTTTCTCAAG
GAATGTGGCCTCAAATTAACACAGGTGTCACCAAGAGGTATTAATGCTATATTTGAACGCCTTCGAAACATTCTCCATGA
GTCTGAAATAGACAAAAGAGTTCAGTACATGATTGAAGTGTTGTTTGCTGTAAGGAAAGATGGGTTCAAAGACCACCCTG
TTATTCTAGAAGAACTTGACTTAGTGGAAGAAGATGATCAGTTCACCCATATGCTTCCTCTGGAAGATGACTATAATCCA
GAAGATGTTCTTAATGTTTTCAAGATGGATCTTAATTTTATGGAGAATGAAGAGAAGTACAAAGCTATTAAGAAGGAAAT
TCTTAATGAAGGAGATAGTGACTCAAACACAGATCAAGATGCTGGAAGTAGTGAAGAGGAGGAGGAGGAAGAGGAGGAAG
AGGGAGAAGAAGACGAAGAAGGACAAAAAGTGACTATTCATGACAAAACAGAAATTAATCTAGTCTCATTTCATCGTGCA
ACTTATCTTGCTATTCAGTCAAGTTTAGATTTTGAAGAATGTGCTCACAAATTGCTGAAAATGGAGTTTCCTGAAAGCCA
AACGAAAGAACTCTGCAACATGATACTGGATTGCTGTGCTCAACAAAGAACATATGAGAAATTTTTTGGCTTATTAGCTG
GGCGATTTTGCATGCTAAAGAAAGAGTACATGGAATCCTTTGAAAGTAAATTCAAAGAACAGTATGATACCATCCATCGC
TTGGAGACAAACAAATTGAGAAATGTTGCTAAGATGTTTGCTCATCTTTTATACACTGATTCACTTCCATGGAGTGTTCT
TGAATGTATAAAGCTGAGTGAAGAAACCACTACGTCCTCCAGTAGGATTTTTGTTAAAATATTTTTCCAAGAACTGTGTG
AATACATGGGTCTTCCTAAACTTAATGCAAGATTAAAGGATGAAACCCTACAGCCATTCTTTGAAGGGTTATTACCCCGA
GATAATCCCAGAAACACTCGTTTTGCCATCAACTTTTTTACTTCTATAGGTCTTGGAGGTTTGACAGATGAATTGCGTGA
GCATCTCAAAAATACACCAAAGGTCATTGTGGCACAGAAACCAGAAATTGAGCCAAATAATTCCTCCCCCTCCTCTTCCT
CTTCTGCATCCTCCTCGGCAGAGTCCTACTCCTCTGCTTCTGGTTCGGACAGCAGTGACAGCAGCTCAGAGTCTTCCAGC
AAAGACAGCGATTCCTCATCCACCAGCAGTCAGAGCTCTGCCTCAGCTAAAGCTATAAGAAAGAAGAGACAAGGGAACAC
CAGAAGCAAAGAAGTAGATAAATTTATCAGGAAACAACAAATAAATGATAGGAAGCAAGAAGAAAGAAGATCAGAGCAAA
GGCACCAAGAAACAAGGACTGAAAGAGAAAGGAGATCAGAAAAACTCAGAGATAAAAATTCAAGG

Alignment

ORF - retro_mluc_207 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.88 %
• Parental protein coverage: 84.03 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RSRDREKRRERERDVDRKRYRRSSSPGRRSPEPSVTQSSSAQDEPTAKKKKEELDPLLTRTGGAYIPPAK
          .SRDREK.RERERDVDRKRYR.SSSPGR.SPEPSVTQSSSAQDEPTAKKKK.ELDPLLTRTGGAYIPPAK
Retrocopy QSRDREKLRERERDVDRKRYRKSSSPGR-SPEPSVTQSSSAQDEPTAKKKKDELDPLLTRTGGAYIPPAK

Parental  LRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQELLQENIVRGRGLLSRSVLQAQSAS
          LRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQELLQENI.RGRGLLSRSVLQAQSAS
Retrocopy LRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQELLQENIARGRGLLSRSVLQAQSAS

Parental  PIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEML
          PIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQ.V.HEVLCLEML
Retrocopy PIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQSVVHEVLCLEML

Parental  TLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFK
          TLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEV.FAVRKDGFK
Retrocopy TLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVLFAVRKDGFK

Parental  DHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQD
          DHPVILE.LDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMD.NFMENEEKYKAIKKEIL.EGDSDSNTDQD
Retrocopy DHPVILEELDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDLNFMENEEKYKAIKKEILNEGDSDSNTDQD

Parental  AGSSEEEEEEEEEEGEEDEEGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKE
          AGSSEEEEEEEEEEGEEDEEGQKVTIHDKTEINLVSF.R..YLAIQSSLDFEECAHKLLKMEFPESQTKE
Retrocopy AGSSEEEEEEEEEEGEEDEEGQKVTIHDKTEINLVSFHRATYLAIQSSLDFEECAHKLLKMEFPESQTKE

Parental  LCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTD
          LCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFES.FKEQYDTIHRLETNKLRNVAKMFAHLLYTD
Retrocopy LCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFESKFKEQYDTIHRLETNKLRNVAKMFAHLLYTD

Parental  SLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAI
          SLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAI
Retrocopy SLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAI

Parental  NFFTSIGLGGLTDELREHLKNTPKVIVAQKPETEPNNSSPSSSSSASSSAESDSSASGSDSSDSSSESSS
          NFFTSIGLGGLTDELREHLKNTPKVIVAQKPE.EPNNSSPSSSSSASSSAES.SSASGSDSSDSSSESSS
Retrocopy NFFTSIGLGGLTDELREHLKNTPKVIVAQKPEIEPNNSSPSSSSSASSSAESYSSASGSDSSDSSSESSS

Parental  KDSDSSSASSQSSASAKAIRKKGQGNTRSKEVDKLIRKQQIHDRKQEERRSEQRHQETRTERERRSEKLR
          KDSDSSS.SSQSSASAKAIRKK.QGNTRSKEVDK.IRKQQI.DRKQEERRSEQRHQETRTERERRSEKLR
Retrocopy KDSDSSSTSSQSSASAKAIRKKRQGNTRSKEVDKFIRKQQINDRKQEERRSEQRHQETRTERERRSEKLR

Parental  DKNSR
          DKNSR
Retrocopy DKNSR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_207 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000007492	1 retrocopy	retro_cpor_1136,
Myotis lucifugus	ENSMLUG00000013437	1 retrocopy	retro_mluc_207 ,
Otolemur garnettii	ENSOGAG00000015287	1 retrocopy	retro_ogar_3200,