RetrogeneDB ID: retro_mluc_2072

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430012:1318226..1318601(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SYS1
• Ensembl ID: ENSMLUG00000005907
• Aliases: None
• Description: SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16162]

Sequence

>retro_mluc_2072
ATGTCTCTCTGGGCTGGCACTGGGGGATCAGCTGGTGTGCAGCGGACCCTTGGTAGACCAGACGTCCCACACTGAGATCC
TGGGCTTTCTACCTCTATAGGTCGGCTCTCCATGGTGTCCCTCTTTCTCATCTCCCTCACCTGTGCCCCAGTTTGCGGGA
CTTCATCTGGTGAGGAAAGCAGAGTCTGGATGTCCCCGTCACTGTCCAATTCTTCCGCTCCTGGGCTGCTGGTTCTATAG
CTCCCTGTCCCCCTGGTACTGACCTGGTGGCTGGTCCAAGCCACGTGCATTGTGCTTATGGCTATCATCAGTGGGTACCT
GTGCATGCACACAGAGCTAAAACAGATTCTCCTCAGCTCAGCCCCGAAATCCAAT

Alignment

ORF - retro_mluc_2072 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.83 %
• Parental protein coverage: 80.77 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  LGLW-LALVDWLLRGSPSLDQMFNAEILGF-STPSGRLSMMSFILNALTCAL-GLLYFIRRGKQCLDFTV
          ..LW.LAL.D.L....P..DQ....EILGF.ST..GRLSM.S..L..LTCA...L..FI..GKQ.LD..V
Retrocopy MSLW>LALGDQLVCSGPLVDQTSHTEILGF<STSIGRLSMVSLFLISLTCAP<SLRDFIW*GKQSLDVPV

Parental  TVHFFH-LLGCWFYSSR-FPSALTWWLVQAVCIALMAVIGEYLCMRTELKEIPLNSAPKSN
          TV.FF..LLGCWFYSS...P..LTWWLVQA.CI.LMA.I..YLCM.TELK.I.L.SAPKSN
Retrocopy TVQFFR<LLGCWFYSSL<VPLVLTWWLVQATCIVLMAIISGYLCMHTELKQILLSSAPKSN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2072 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017516	1 retrocopy	retro_cjac_752,
Myotis lucifugus	ENSMLUG00000005907	1 retrocopy	retro_mluc_2072 ,