RetrogeneDB ID: retro_mluc_2117

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430043:46631..47264(+)
• Located in intron of: ENSMLUG00000017153

Retrocopy information

• Ensembl ID: ENSMLUG00000002841
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MED20
• Ensembl ID: ENSMLUG00000014024
• Aliases: None
• Description: None

Sequence

>retro_mluc_2117
ATGGGAGTGACCTGTGTGTCCCAGATGCCTGTGGCTGAGGGCAAGAGTGTCCAGCAGACCATGGAGCTCCTCACCCTGAA
GTTGGAGGTGCTTGGGGCAGAGAAGCAAGGAACATTTTGTGTAGACTGTGAGACCTATCACACGGCTGCTTCTACCCTTG
GCAGCCAAGGTCAGACGGGGAAGCTGATGTATGTGATGCACAATTCAGAATACCCTTTGAGCTGCTTCGCCCTCTTTGAG
AATGGCCCTTGCCTTATTGCCGACACCAACTTTGATGTGCTCATAGTGAAGCTCAAGGGCTTCTTCCAGAGTGCCAAGGC
CAGCAAGATTGAGACCCGGGGCACCCGTTACCAGGACTGTGACTTCCTAGTGAAGGTGGGCACGGTCACAATGGGGCCCA
GTGCCCGAGGCATCTCTGTGGAGGTGGAATATGGCCGTGTGTGGTAGCTAGTGACTGCTGGAGCCTGCTGCTCGAATTCC
TACAGAGTTTTCTAGGCAGCCACACACCCGGGGCTCCCGCAGTTTGGCAACAGACACGACACAGACTACGGCCCAGCAGA
TACCATGGTCCAGTACATGGAACTCTTCAACAAGATTCGCAAGCAGCAGCAGGTGCCAGTGGCTGGGATTCGT

Alignment

ORF - retro_mluc_2117 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.99 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MNIKNVSQMPVAEGKSVQQTVELLTRKLEVLGAEKQGTFCVDCETYHTAASTLGSQGQTGKLMYVMHNSE
          M....VSQMPVAEGKSVQQT.ELLT.KLEVLGAEKQGTFCVDCETYHTAASTLGSQGQTGKLMYVMHNSE
Retrocopy MGVTCVSQMPVAEGKSVQQTMELLTLKLEVLGAEKQGTFCVDCETYHTAASTLGSQGQTGKLMYVMHNSE

Parental  YPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISV
          YPLSCFALFENGPCLIADTNFDVL.VKLKGFFQSAKASKIETRGTRYQ.CDFLVKVGTVTMGPSARGISV
Retrocopy YPLSCFALFENGPCLIADTNFDVLIVKLKGFFQSAKASKIETRGTRYQDCDFLVKVGTVTMGPSARGISV

Parental  EVEYG-PCVVASDCWSLLLEFLQSFLGSHTP-GAPAVFGSRHDTVYGPADTMVQYMELFNKIRKQQQVPV
          EVEYG.PCVVASDCWSLLLEFLQSFLGSHTP.G.P..FG.RHDT.YGPADTMVQYMELFNKIRKQQQVPV
Retrocopy EVEYG<PCVVASDCWSLLLEFLQSFLGSHTP>GLPQ-FGNRHDTDYGPADTMVQYMELFNKIRKQQQVPV

Parental  AGIR
          AGIR
Retrocopy AGIR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2117 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001613	1 retrocopy	retro_cfam_1492,
Dasypus novemcinctus	ENSDNOG00000016666	1 retrocopy	retro_dnov_533,
Microcebus murinus	ENSMICG00000011326	1 retrocopy	retro_mmur_972,
Myotis lucifugus	ENSMLUG00000014024	1 retrocopy	retro_mluc_2117 ,