RetrogeneDB ID: retro_mluc_2195

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430094:470273..471301(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030233
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RELT
• Ensembl ID: ENSMLUG00000012852
• Aliases: None
• Description: None

Sequence

>retro_mluc_2195
GTGACTCAAGACACACTATGTGGAGACTGCCAGCCTGGGTGGTTTGCCCCTTCAGAGGTCCCCCGTGTTCCCTGTCAGCT
GTGCTCTTGGACACCTCTGGGTCCTCGTGGTTGTTATGAGCGGAGAAGGCGGACCCGATGTGGTGTGGCAGTGGCAGCAG
GGGCCAGAGGCACCGGGGAGACTCCGCTGCCTGGGAACAGCACGCGGGCAGGCGGCCTGAGGAGACAGCGGCCCTGCACG
CAGTTATCGCCATCGTGCCCATCTTCTGCCTCATGGGGCTGCTGGGCATCCTGGTGTGTAACCTGCTCAAGCGGAAGGGC
TACCACTGCACTGCCAACAAGGAAGTCGGGCCCGGCCCTGGAGGTGGAGGCAGCGGGAACAACCCTGCCTATGGGGCTGA
AGACGCCAACGAGGACACCATCGGGGTCCTGTTGCACCTGATCACGGAGAAGAAAGAGAATGCAGCGGCCCTGGAGGAGC
TGCTGAAGGAGTATCACAACAAACAGCTGGCACAAACCAGCCACCGGCCTGTGCCCAGGCTGCCGCCCGGACCCAGCATG
CCGTACATCTGCCCACACTACCACCACCTCCACACCGTGCAGGGCCTGGCCTCGCTCTCTGGCCTCTGCTGCTCCCGTTG
TAACCAGAAGTGGCCCAAGGTGCTGCTGTCCTCTGAAGCTGCGGCCGCTACCACTCCCACTCCCAGATTTCTGCCCAACC
CAGCCAGGGCGCCCAAGACCAGGGCCGGACACCAGGGCGAGATCACTATCTTGTCTGTGGGCAGGTTCCGGGTGGCCCGA
ATTCCTGAGCAGTGGACAAATTCATGGGCCTCTGAGGTGAAGACCATCACAGAGGTTGGGCCCGCAGTGGGTGATTTCAC
TGACTCCCCACAAGCTGGCCACCCCACTGAGCAGCGGGCACTACTGGGAAGTAGTGGAAGCCATACTAAGTGGCCAAAGC
CCCCAGCAGAGAAGAAGGCCAAGGAGAACCGCTATGTGGTCTGGCTAAGTGAGAGCAACCTGGTCATC

Alignment

ORF - retro_mluc_2195 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.62 %
• Parental protein coverage: 79.31 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VTQDTLCGDCRPGWFAPSEVPRVPCQPCSWTPLGPRSCYERRRRTRRGVAAAAGARGTGETRPPGNSTRA
          VTQDTLCGDC.PGWFAPSEVPRVPCQ.CSWTPLGPR.CYERRRRTR.GVA.AAGARGTGET..PGNSTRA
Retrocopy VTQDTLCGDCQPGWFAPSEVPRVPCQLCSWTPLGPRGCYERRRRTRCGVAVAAGARGTGETPLPGNSTRA

Parental  GG-PEETAAPYAVIAIVPIFCLMGLLGILVCNLLKRKGYHCTANKEVGPGPGGGGSGNNPAYGAEDANED
          GG.PEETAA..AVIAIVPIFCLMGLLGILVCNLLKRKGYHCTANKEVGPGPGGGGSGNNPAYGAEDANED
Retrocopy GG<PEETAALHAVIAIVPIFCLMGLLGILVCNLLKRKGYHCTANKEVGPGPGGGGSGNNPAYGAEDANED

Parental  TIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVPRLPPRPSMPYICPHYHHLHTVQGLASLSGV
          TIGVL..LITEKKENAAALEELLKEYH.KQL.QTSHRPVPRLPP.PSMPYICPHYHHLHTVQGLASLSG.
Retrocopy TIGVLLHLITEKKENAAALEELLKEYHNKQLAQTSHRPVPRLPPGPSMPYICPHYHHLHTVQGLASLSGL

Parental  CCSRCNQKWPEVLLSPEAAAATTPTPRYLPNPARAPKAGAKAGRQGEITILSVGRFRVARIPEQRTNSWA
          CCSRCNQKWP.VLLS.EAAAATTPTPR.LPNPARAPK....AG.QGEITILSVGRFRVARIPEQ.TNSWA
Retrocopy CCSRCNQKWPKVLLSSEAAAATTPTPRFLPNPARAPK--TRAGHQGEITILSVGRFRVARIPEQWTNSWA

Parental  SEVKTITEVGPSVGDFTDSPQAGHPTEQRALLGSSGSHTKWPKPPAEKKAEESRYVVRLSESNLVI
          SEVKTITEVGP.VGDFTDSPQAGHPTEQRALLGSSGSHTKWPKPPAEKKA.E.RYVV.LSESNLVI
Retrocopy SEVKTITEVGPAVGDFTDSPQAGHPTEQRALLGSSGSHTKWPKPPAEKKAKENRYVVWLSESNLVI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2195 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012852	1 retrocopy	retro_mluc_2195 ,
Mus musculus	ENSMUSG00000008318	1 retrocopy	retro_mmus_3550,