RetrogeneDB ID: retro_mluc_2196

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430094:983009..983535(+)
• Located in intron of: ENSMLUG00000000019

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C6ORF221
• Ensembl ID: ENSMLUG00000004469
• Aliases: None
• Description: None

Sequence

>retro_mluc_2196
CTCGTGCAACCAGAGCAGCGGGGAGGGGCGCCATTCCGGTGCTGGGTGACCGCGAAGCAGCACTCCTGGTTGCACACGGA
GAACCCCAAGAGCCCGCAGACAGGTCACCTCGAGGCGAGGCTGGTGGAAGATCTTCGGCCCAGCAGAGAGCACATTCCGC
ACGTCGAGTGTGTGTCGCCGACGCTGCTTCGCATTCATCAGCGGGACCCTGAAAGCGAGGCTGAGATCTTGCTATTGGGT
CGGCCTCCTTACCGAAAGGATGTGTCCGAGATGATCATGAACTTGGCTCACTATCACCGCCAACTCAAGCACAAGGCTCC
TGGAAGAACGCTGCCCAGCAGGCCGAGCCCAGGAATTCTCCACTGCAGTCTGGGTAGCTGCAGTCCAGGCCTCTCCCGAC
GCTGTCCGCGAGAAGGCGACCCAGTGATCCCCCAACACTGTTCAAGAGAAGGCGACCCAGCTGTTCCCCAACACAGTCTA
GGAGGCAGCGACTCAGAGCTCCCCCAACGCTATCCAGAGCCCGGGT

Alignment

ORF - retro_mluc_2196 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.44 %
• Parental protein coverage: 50.58 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LVQLEQRGGAPFQVLGDHAKQPYWFHTEYLKSPKTVHLEAWLVEAIFGPGGEHIPHVECVSQTLLRINQW
          LVQ.EQRGGAPF......AKQ..W.HTE..KSP.T.HLEA.LVE....P..EHIPHVECVS.TLLRI.Q.
Retrocopy LVQPEQRGGAPFRCWVT-AKQHSWLHTENPKSPQTGHLEARLVEDL-RPSREHIPHVECVSPTLLRIHQR

Parental  DPEGEAEILIFGRPSYQKDVSKMIMNLAHYHRQLR-AQGSGPGIA---EPRN-FSAAVRVAALQASPDKV
          DPE.EAEIL..GRP.Y.KDVS.MIMNLAHYHRQL..AQGS....A...EPRN.FS.AV.VAA.QASPD.V
Retrocopy DPESEAEILLLGRPPYRKDVSEMIMNLAHYHRQLK<AQGSWKNAAQQAEPRN<FSTAVWVAAVQASPDAV

Parental  RVAKSQRSPDAVREKATQRSPDAVREKATQRSPDAVREMG
          R....Q.SP..V.EKATQ..P..V.E.ATQ.SP.A....G
Retrocopy REKATQ*SPNTVQEKATQLFPNTV*EAATQSSPNAIQSPG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2196 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000007887	1 retrocopy	retro_amel_1880,
Callithrix jacchus	ENSCJAG00000009947	1 retrocopy	retro_cjac_1153,
Myotis lucifugus	ENSMLUG00000004469	1 retrocopy	retro_mluc_2196 ,
Myotis lucifugus	ENSMLUG00000017174	2 retrocopies	retro_mluc_115, retro_mluc_252,
Ochotona princeps	ENSOPRG00000013565	3 retrocopies	retro_opri_322, retro_opri_406, retro_opri_651,
Sorex araneus	ENSSARG00000003714	1 retrocopy	retro_sara_631,