RetrogeneDB ID: retro_mluc_2206

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430099:869085..870390(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029427
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: BANP
• Ensembl ID: ENSMLUG00000016116
• Aliases: None
• Description: None

Sequence

>retro_mluc_2206
ATGATGTCAGAACAGGATCTGGCGGATGTGGTGCAGATTGCACTAGAAGACCGGAGTCACCATCACCCAGTTGTACTGGA
GAATCATGTAGTGACAGACGAAGATGAACCAGCTTCGAAACACCAACGATTGGAGATCAATTGCCAGGACCCCTCTATAA
AGTCCTTCCTGTATTCCATTAACCAGACAATATGCTTGCGAATGGATAGAATTGAAGCCAAGCTGCAAGCTCTCGAGGCT
ACTTGTAAATCGTTAGAAGAAAAGCTGTATCTGGTCACAAACAAGCAGCACAGTCCCATCCAAGTCCCCATGGTGGCGGG
CTCCCCTCTCGGCGCAACACAGACGTGCAACAAAGTGCGATGCGTCGTCCCCCAGACTACGGTGATACTCAACAGTGATG
GGCAGAACGCCCTTGTAGCCAAGACGGACGACCCCTTGAGCAACAGGGCACCGGATTCCCTGGAAAATATCATTAGCAGC
GCGGTTCCCGGGCGCCGGCAGAACACCATTGTGGTGAAGGTACCCGGGCAAGGAGACAGCCACAATGAGGACGGGGAGAG
TGGGTCCGAGGCCAGTGACTCCGTTCCCACCTGGGGACAGTCGGGAAGTCAGCACATCGGAAACAACGTCACCCTCATCA
CCCTGAACTCAGAAGAGGACTACCCCAACGGCACCTGGCTGGGGGACGAGAACAACCCCGAGATGCGGGTGCGCTGCGCC
ATCGTCCCCTCCGACATGCTGCGTATCAGCACCACCTGCCACACGGCAGAGAAGATGGCGCTGACGCTGCTGGACTACCT
CTTCCCCCGGGAGGTGCAGGCCGCCTCCAACCTCTCGGGCCAGGGCAAGCATGGCAAGAAGCAGCTCGACCCCCTCACCA
TCTATGGGATCCGGTGTCACCTCTTTTATAAATTTGGAATCACGGAATCTGACTGGTACCGAATCAAACAGAGCATCGAC
TCCAAATGCCGGACAGCCTGGCGGCGGAAACAGCGAGGCCAGAGCCTGGCCGTCAAGAGCTTCTCTCGGAGAACGCCATC
CTCCTCCTCTTACAGCGCATCCGAGAGCCTGAGGAGCACGCCACCGCCCGCCAGTGAGATACCACAGCCCCAGCCGCAGG
CCCTGCACTATGCCCTGGCCAACGCCCAACAGGTCCAGATCCACCAGATTGGAGAGGATGGACAGGTCCAAGTAATCCCA
CAGGGTCACCTCCACATCGCTCAGGTGCCCCAAGGGGAGCAGGTGCAGATCACGCAGGACAGCGAGGGCTATCTACAGAT
ACACCAGGTGGGACAGGATGGGCAG

Alignment

ORF - retro_mluc_2206 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.48 %
• Parental protein coverage: 78.66 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MMSEQDLADVVQIAVEDLSHHHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSINQTICLRLDS
          MMSEQDLADVVQIA.ED.SHHHPVVLENHVVTDEDEPA.K.QRLEINCQDPSIKSFLYSINQTICLR.D.
Retrocopy MMSEQDLADVVQIALEDRSHHHPVVLENHVVTDEDEPASKHQRLEINCQDPSIKSFLYSINQTICLRMDR

Parental  IEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVRCVVPQTTVILNSDRQNAIVA
          IEAKLQALEATCKSLEEKL.LVTNKQHSPIQVPMVAGSPLGATQTCNKVRCVVPQTTVILNSD.QNA.VA
Retrocopy IEAKLQALEATCKSLEEKLYLVTNKQHSPIQVPMVAGSPLGATQTCNKVRCVVPQTTVILNSDGQNALVA

Parental  KMDDPLSNRAPDSLENIISNAVPGRRQNTIVVKVPGQEDSHNEDGESGSEASDSVSTCGQSGSQNIGNNV
          K.DDPLSNRAPDSLENIIS.AVPGRRQNTIVVKVPGQ.DSHNEDGESGSEASDSV.T.GQSGSQ.IGNNV
Retrocopy KTDDPLSNRAPDSLENIISSAVPGRRQNTIVVKVPGQGDSHNEDGESGSEASDSVPTWGQSGSQHIGNNV

Parental  TLITLNSEEDYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLSG
          TLITLNSEEDYPNGTWLGDENNPEMRVRCAI.PSDML.IST.C.TAEKMALTLLDYLF.REVQA.SNLSG
Retrocopy TLITLNSEEDYPNGTWLGDENNPEMRVRCAIVPSDMLRISTTCHTAEKMALTLLDYLFPREVQAASNLSG

Parental  QGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPSSSS
          QGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPSSSS
Retrocopy QGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPSSSS

Parental  YSASESLMSTPPPASEIPQPQPQALHYALANAQQVQIHQIGEDGQVQVIPQGHLHIAQVPQGEQVQITQD
          YSASESL.STPPPASEIPQPQPQALHYALANAQQVQIHQIGEDGQVQVIPQGHLHIAQVPQGEQVQITQD
Retrocopy YSASESLRSTPPPASEIPQPQPQALHYALANAQQVQIHQIGEDGQVQVIPQGHLHIAQVPQGEQVQITQD

Parental  SEGNLQIHHVGQDGQ
          SEG.LQIH.VGQDGQ
Retrocopy SEGYLQIHQVGQDGQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2206 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000016116	1 retrocopy	retro_mluc_2206 ,