RetrogeneDB ID: retro_mluc_2214

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430110:100067..100643(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC25A11
• Ensembl ID: ENSMLUG00000014049
• Aliases: None
• Description: None

Sequence

>retro_mluc_2214
GGGGCTGATGGCGCACCCCTGGCTTTCTGCTGAAGGCCCTGACCAGCATGACTGCAGGTGCAACCGGTGGGAACACCACC
AAGGTAATCTTACCCAAATGTTCGCCAGTGGCCGGCTTCCAGCTGACCAGAGCCCTGGCTACAAAAGCGTGCTTAATGCC
CTGATGTGAATCACTCTGGAAGAGGGGGGTCCCCACACTGTGGAGGGGCTGCATCCCTACCATGGCTCGGGCTGCCATTG
TCAGCCAGCTCGCCTCTTACTCCCAATCCAAGCAGTTCTGACTGGTCTCAGGCTACTTCGCTGACAACATCCTGTGCCAC
TTCTGTGCCAGCATGATCAGTGGCCTGGTCACTGCTGCTGCCCCCATGCCCATGGACATTGTCAAGATCTAGAACATGTG
AATGATTGACGGGAAGCCGGAATACAGAAACAGGCTGGATGTGCTGGTGAAGGTCTTCACTAGAGGGCTTCTTCGGCCTG
TGGGCGGGCTTTACACCGCACTGTGCCCGCTTGGGCCCCCACACCATCGCCTTCATCTTCTTGGAGGAGATGAACAAGGC
CTCCAAGCGTCTTTTC

Alignment

ORF - retro_mluc_2214 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.34 %
• Parental protein coverage: 64.01 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  GADGTP-PGFLLKALIGMTAGATGAFVGTPAEVAL-IRMTADGRLPADQRRGYKNVFNALVRIAREEG-V
          GADG.P.PGFLLKAL..MTA...GA..G....V.L...M.A.GRLPADQ..GYK.V.NAL..I..EEG.V
Retrocopy GADGAP<PGFLLKALTSMTA---GATGGNTTKVIL<TQMFASGRLPADQSPGYKSVLNALM*ITLEEG>V

Parental  PTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASMPVDIVKTRI
          PTLWRGCIPTMARA..V...QLASYSQSKQF.L.SGYF.DNILCHFCASMISGLVT.AA.MP.DIVK..I
Retrocopy PTLWRGCIPTMARAAIVS--QLASYSQSKQF*LVSGYFADNILCHFCASMISGLVTAAAPMPMDIVK--I

Parental  QNMRMIDGKPEYKNGLDVLAKVVRYEGFFSLWKGFTPYYARLGP-HTVLTFIFLEQMNKAYKRLF
          .NM.MIDGKPEY.N.LDVL.KV....G......G.......LGP.HT...FIFLE.MNKA.KRLF
Retrocopy *NM*MIDGKPEYRNRLDVLVKVFT-RGLLRPVGGLYTALCPLGP>HTI-AFIFLEEMNKASKRLF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2214 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000014049	1 retrocopy	retro_mluc_2214 ,