RetrogeneDB ID: retro_mluc_2267

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430165:472580..472803(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PDDC1
• Ensembl ID: ENSMLUG00000017584
• Aliases: None
• Description: None

Sequence

>retro_mluc_2267
GGAGTGACAGCCCAGGCCTTCCTCCACGGCTTCCAGTTGGCAGGCGCTGCCCTCAACCTGCAGGTGGCGGGGCGGGGGGG
AAGACCCTGGACTCGGTGGGCGTGAGTGAGCGCAATGCACGCTGGGTGCGGGCCTTCCGCCCAAGGCCTAGGCCAGCCCC
GCCATCCTCGGGTCCACTGACGTTGCCCGGTGCCGGGCCCTCCTGACTCCCAGCCGTCCGGGC

Alignment

ORF - retro_mluc_2267 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.23 %
• Parental protein coverage: 57.25 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GVSAQSFLHCFTLASAAFNLQVAT-PGGKTMDFVDVSESNARWVQDFR-LKAYASPAKLESIDGARYHAL
          GV.AQ.FLH.F.LA.AA.NLQVA...GGKT.D.V.VSE.NARWV..FR..KA.ASPA.L.S.D.AR..AL
Retrocopy GVTAQAFLHGFQLAGAALNLQVAG<AGGKTLDSVGVSERNARWVRAFR<PKA*ASPAILGSTDVARCRAL

Parental  LIPSCPG
          L.PS.PG
Retrocopy LTPSRPG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2267 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000005033	1 retrocopy	retro_meug_954,
Myotis lucifugus	ENSMLUG00000017584	1 retrocopy	retro_mluc_2267 ,
Mus musculus	ENSMUSG00000051007	1 retrocopy	retro_mmus_2040,
Rattus norvegicus	ENSRNOG00000046382	1 retrocopy	retro_rnor_1887,
Sarcophilus harrisii	ENSSHAG00000003122	1 retrocopy	retro_shar_496,