RetrogeneDB ID: retro_mluc_2310

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430191:487982..488965(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017756
• Aliases: None
• Description: None

Sequence

>retro_mluc_2310
ACCGAGGCGGAGGACTCCCTCCAGCAGGTGCACACAACAGTCAGGAGCAGCCGCAGGAGACGGAGGATCTGACCAAGCAG
ATGGCGCTCCCGCCGCAGGTGCAGGAGCAGCGAGCGAAGGTCCAGGAGCACCTCGTTGTCCCCACAAGGAAGCTGGATGA
AATCAACCAGCAGCTTGTTGCGGGCAGCACGGCCGCCCAGCAGAAGTTCCTGAGTGTGATGGAATTGATCGGAAGCCTGA
AAGCCAGCGTCCATCGCCTCCAGAGCCACGTGGAGGAGCTGGAGTCCTGTGGCCCAGCGGGGCGGAGCCAGGGGAAGCGT
GGCCCCAAGTCCGCACCCGGCTTCCCGGGTGGGAGAGAGCTGTGTGACCCACGCCAACACTGTGTGTGTGACCACGAGCT
TGCAGAAAAGATCGCTTCCTTGCCAGGTCCGCCAAGCCCCTACACGGAAGAAAATAAGCTGTTGAAGAAGGCGGTGAGGA
CGCTGCTGGCGCAGCTGAGCCTGGAGCAGCAGCGGCGGGGGGCCTTGGAGGAGCAGTTCGGGCTCGTGCTGAAGGAGAAC
GAGCAGCTGGAGCAGCAGCTGCGGGCCGCCGGCGCCTTCCGGGCCCGGGCGCTGGAGCTGGAGGCCGCGGTGGCTGAAAT
GCGGCGGGTGCTGCCGTCGGAGCGTCTCTTCGTGCCTGGGATCGAAAAGCTGGTGCCCGACTCCCTGCTGGTCCCGTTCA
GAAAGCCCGGCCGGAGCCTGTTGGACGAGATGCCACTGACGGTGCCCGAGGCCCAGCGGAGGCCCCTCCCGGAGCCCCTC
CAGCGCAGCAGCAGCTGCAGCGAGACGGTGCTGAGCAGCTTGGCGGGCGGGGACATCGGCACGAGCCACGAGGGGACCTG
CATCCCGCAGGCCAAGGCTGCGAAGCAGAGCGGTGTGTCCCGGCTGCAGGAACTCCACACACAGAATAGCGCCCTGAAGG
CCAGGTCCGAGGAGCTGCAGAAG

Alignment

ORF - retro_mluc_2310 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.78 %
• Parental protein coverage: 76.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TELEDSLQQMYTT-NQEQLQEIEYLTKQVELLRQMNEQHAKVYEQLDVTARELEETNQKLVADSKASQQK
          TE.EDSLQQ..TT..QEQ.QE.E.LTKQ..L..Q..EQ.AKV.E.L.V..R.L.E.NQ.LVA.S.A.QQK
Retrocopy TEAEDSLQQVHTT<SQEQPQETEDLTKQMALPPQVQEQRAKVQEHLVVPTRKLDEINQQLVAGSTAAQQK

Parental  ILSLTETIECLQANIDHLQGQVEELKSSGQGRRSQGKRGQKSAPSFSGLKELYDLRQHFVYDHVFAEKIT
          .LS..E.I..L.A....LQ..VEEL.S.G...RSQGKRG.KSAP.F.G..EL.D.RQH.V.DH..AEKI.
Retrocopy FLSVMELIGSLKASVHRLQSHVEELESCGPAGRSQGKRGPKSAPGFPGGRELCDPRQHCVCDHELAEKIA

Parental  SLPSQPSPDEEENKHLKKAVRTLQAQLSLERQRRVALEEEYGLVLKENNELEQQLGATGAYQARALELEA
          SLP..PSP..EENK.LKKAVRTL.AQLSLE.QRR.ALEE..GLVLKEN..LEQQL.A.GA..ARALELEA
Retrocopy SLPGPPSPYTEENKLLKKAVRTLLAQLSLEQQRRGALEEQFGLVLKENEQLEQQLRAAGAFRARALELEA

Parental  EVAEMRRVLQSERPFVNGVEKLVPDSLFVPFKEPGQSLLEEMLLTVPEAQRRPL----KRSS--SETVLS
          .VAEMRRVL.SER.FV.G.EKLVPDSL.VPF..PG.SLL.EM.LTVPEAQRRPL.....RSS..SETVLS
Retrocopy AVAEMRRVLPSERLFVPGIEKLVPDSLLVPFRKPGRSLLDEMPLTVPEAQRRPLPEPLQRSSSCSETVLS

Parental  SLAGGDIVKGHEETCIRRAKAVKQRGVSLLQEVDTQYSALKAKYEELLK
          SLAGGDI...HE.TCI..AKA.KQ.GVS.LQE..TQ.SALKA..EEL.K
Retrocopy SLAGGDIGTSHEGTCIPQAKAAKQSGVSRLQELHTQNSALKARSEELQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2310 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000017756	1 retrocopy	retro_mluc_2310 ,