RetrogeneDB ID: retro_mluc_2319

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430200:642387..644054(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACOX1
• Ensembl ID: ENSMLUG00000001210
• Aliases: None
• Description: Acyl-coenzyme A oxidase [Source:UniProtKB/TrEMBL;Acc:G1NV31]

Sequence

>retro_mluc_2319
ATGTTCCTGCCCACCTTGCTTCACCAGGCGACTGCGGAGCAGCAGGAGCGCTTCTTCATGCCCGCCTGGAACCTGGAGGT
CATTGCACTTACGCCCAGGCAGAGATGGGCCATGGGACTCATCTGTGAGGCTTGGAAACCACAGCCACATATGACCCTGA
AACTCAGGAGTTTATTCTCAATAGTCCTACTGTGACCTCCATCAAGTGGTGGCCTGGCGGACTTGGAAAGACTTCAAATC
ATGTGATAGTACTAGCCCAGCTCTACACCCAGGGGAAATGCTATGGATTACATGCCTTCATTGTACCTATTCGTGAAATT
GGAACCCACAAGCCTTTGCCAGGGATCACTGTTGGCGACACTGACCCCAAATTCGGCTATGATGAGATGGATAATGGCTA
CCTGAAGATGGACCATTATCGTATCCCCAGAGAAAACATGCTGGTGAAGTACGCCCAGGTGAAGCCTGGTGGCACCCACG
TGAAAGCCGTGAGTAACAAGCTGACCTACGGGACCATGGTGTCCATCAGGTCCTTCCACGTGGGAGAAGCTGCTTGGAGC
CTGGCGAAGGCCTGCACCATTGCCGTCCGATACAGCGCCGTGAGGCACCAGTCGGAAATCAAGCCGGGTGAACCAGAACC
ACAGATTTTGGATTTTCAAACCCAGCAATATAAACTCTTCCCACTGCTGGCCACTGCCTATGCCTTCCATTTTGTAGGCG
CCTACATGAAGGAGACCTATCGTCGCATTAATGAAGACATTGGCCAAGGGGACCTGAGTGAGCTGCCCGACCTTCATGCC
CTCACCGCCGGGCTGAAGGCTTTCACCTCCTGGACAACTAACACTGCCATCGAAGCCTGTCGGATGGCCTGTGGCGGGCA
AGGCTACTCTCACTGCAGCGGCCTCCCAAACATCTACGTCACCTTCACCCCGACCTGCACCTTCGAGGGAGAAAACACCG
TCATGATGCTGCAGACCGCCCGGTTTCTGATGAAAAGTTACAACCAGGTGCACTTGGGAAAGCTGGTGTGTGGCATGGTG
TCCTACTTGAATGACCTGCCCAGTCAGCGCATCCAGCCGCAGCAGGTGGCCGTGTGGCCCACCGTGGTGGACATCGACAG
CCCCCACAGCCTCACCAAAGCCTATCAGCTCCGGGCGGCCAGATTAGTAGAAATCGCTGCCAAAAACCTTCAAACTGAAG
TGAGTCACAGAAAAAGCAAGGAGGTCGCGTGGAACCTGACTTCCATGGACCTCGTGTGAGCTAGTGAGGCACACTGCCAC
TATGTGACAGTTAAGGTCTTTTCAGAGCAGCTCCTCAAAATTCAAGATAAGTCCATCCAGGCCGTCTTGAGGAATTTGTG
CCTCTTGTATTCTCTGTACGGGACCAGTCAGAAGGCAGGGGATTTTCTTCAGGAGAACATCCTGACAGACTCTCAGATCA
CCCAGGTGCACCAGCGCATCAAGGAGCTACTGACCGTGATCCGCCCGGACGCTGTTACGCTCATCGATGCGTTTGATTTC
CAGGATGTGTCGCTGGGCTCCGTGCTGGGCCGCTACAATGGCAACGTGTATGAGAACCTGTTCAAGTGGGCCAAGACCTC
CCCGCTCAACAAAGCCGAGGTCCATGAATCTTTCTACAAGCACCTGAAGCCACTGCAGTCCAAGCTC

Alignment

ORF - retro_mluc_2319 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.2 %
• Parental protein coverage: 84.11 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MFIPTLLNQGTTAQKEKWLLPAQRLQIIG-TYAQTELGHGTHLRGLETTATYDPETQEFVLNSPTVTSIK
          MF.PTLL.Q.T..Q.E....PA..L..I..TYAQ.E.GHGTHL.GLETTATYDPETQEF.LNSPTVTSIK
Retrocopy MFLPTLLHQATAEQQERFFMPAWNLEVIA<TYAQAEMGHGTHL*GLETTATYDPETQEFILNSPTVTSIK

Parental  WWPGGLGKTSNHAIVLAQLYTQGKCYGLHAFIVPIREIGTHKPLPGITVGDIGPKFGYDEMDNGYLKMDH
          WWPGGLGKTSNH.IVLAQLYTQGKCYGLHAFIVPIREIGTHKPLPGITVGD..PKFGYDEMDNGYLKMDH
Retrocopy WWPGGLGKTSNHVIVLAQLYTQGKCYGLHAFIVPIREIGTHKPLPGITVGDTDPKFGYDEMDNGYLKMDH

Parental  YRIPRENMLMKYAQVKPDGTYVKPVSNKLTYGTMVFIRSFLVGEAARSLAKACTIAIRYSAVRHQSEIKP
          YRIPRENML.KYAQVKP.GT.VK.VSNKLTYGTMV.IRSF.VGEAA.SLAKACTIA.RYSAVRHQSEIKP
Retrocopy YRIPRENMLVKYAQVKPGGTHVKAVSNKLTYGTMVSIRSFHVGEAAWSLAKACTIAVRYSAVRHQSEIKP

Parental  GEPEPQILDFQTQQYKLFPLLATAYAFHFVGAYMKETYHRINEDIGQGDLSELPELHALTAGLKAFTSWT
          GEPEPQILDFQTQQYKLFPLLATAYAFHFVGAYMKETY.RINEDIGQGDLSELP.LHALTAGLKAFTSWT
Retrocopy GEPEPQILDFQTQQYKLFPLLATAYAFHFVGAYMKETYRRINEDIGQGDLSELPDLHALTAGLKAFTSWT

Parental  TNTAIEACRMACGGHGYSHCSGLPNIYVTFTPTCTFEGENTVMMLQTARFLMKSYDQVHSGKLVCGMVSY
          TNTAIEACRMACGG.GYSHCSGLPNIYVTFTPTCTFEGENTVMMLQTARFLMKSY.QVH.GKLVCGMVSY
Retrocopy TNTAIEACRMACGGQGYSHCSGLPNIYVTFTPTCTFEGENTVMMLQTARFLMKSYNQVHLGKLVCGMVSY

Parental  LNDLPSQRIQPQQVAVWPTVVDINSPHSLTEAYRLRAARLVEMAAKNLQTEVSHRKSKEVAWNLTSVDLV
          LNDLPSQRIQPQQVAVWPTVVDI.SPHSLT.AY.LRAARLVE.AAKNLQTEVSHRKSKEVAWNLTS.DLV
Retrocopy LNDLPSQRIQPQQVAVWPTVVDIDSPHSLTKAYQLRAARLVEIAAKNLQTEVSHRKSKEVAWNLTSMDLV

Parental  RASEAHCHYVTVKLFSEQLLKIQDKSIQAVLRNLCLLYSLYGISQKAGDFLQENILTDSQITQVHQRIKE
          .ASEAHCHYVTVK.FSEQLLKIQDKSIQAVLRNLCLLYSLYG.SQKAGDFLQENILTDSQITQVHQRIKE
Retrocopy *ASEAHCHYVTVKVFSEQLLKIQDKSIQAVLRNLCLLYSLYGTSQKAGDFLQENILTDSQITQVHQRIKE

Parental  LLTVIRPDAVTLVDAFDFQDVSLGSVLGRYDGNVYENLFEWAKNSPLNKDEVHESFYKHLKPLQSKL
          LLTVIRPDAVTL.DAFDFQDVSLGSVLGRY.GNVYENLF.WAK.SPLNK.EVHESFYKHLKPLQSKL
Retrocopy LLTVIRPDAVTLIDAFDFQDVSLGSVLGRYNGNVYENLFKWAKTSPLNKAEVHESFYKHLKPLQSKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2319 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000001210	1 retrocopy	retro_mluc_2319 ,