RetrogeneDB ID: | retro_mluc_2328 | ||
Retrocopy location | Organism: | Microbat (Myotis lucifugus) | |
| Coordinates: | GL430217:680228..680603(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TMEM17 | ||
| Ensembl ID: | ENSMLUG00000009936 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mluc_2328
ATAGAGATGTCAGATATGGTCCATTTGTAGCCAGGAAACTTCAGCCGGACCGTGTTCAGTGACTCAAACCAGAACGGCCC
GAGTACTGCAAGATCCGGAAAACGGAATGGTGTCCAGGCTGGCATTGCAGATGTCACTGTATTCTTACACTTGCTTTTTC
CCACTTTGGCGGGTGAGCAGCATTATGATGCTTCAGATGAAGTGTCCTATTTTGCCTGATTACTACAAATTCATCGTGGT
CACTTTGTCATCCTAATAACCTTAACTGGAGCTATCAGGTTGTATCTGGGCCGCATGGGTAACCTACAGGAAAAGATTCC
TGAGTTGGCTGGCTTTTGGCTTTTGAGCCTTCTAATGCAATTGCCTTTCATTCTT
ORF - retro_mluc_2328 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 68.99 % |
| Parental protein coverage: | 63.64 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | MELPEPVRQRLGNFSRTMFRDSNRT-EPEYS-EGPDNEVVSSLALQMSLYFNAYFFPLWWVSSIMMLRIK |
| .E....V....GNFSRT.F.DSN....PEY....P.N..VS.LALQMSLY....FFPLW.VSSIMML..K | |
| Retrocopy | IEMSDMVHL*PGNFSRTVFSDSNQN<RPEYC<QDPENGMVSRLALQMSLYSYTCFFPLWRVSSIMMLQMK |
| Parental | YPILPDYYKFIVVTV-IILITLIEAIRLYLGYMGNLQEKVPELAGFWLLSLLLQLPLIL |
| .PILPDYYKFIVVT...ILITL..AIRLYLG.MGNLQEK.PELAGFWLLSLL.QLP.IL | |
| Retrocopy | CPILPDYYKFIVVTL<VILITLTGAIRLYLGRMGNLQEKIPELAGFWLLSLLMQLPFIL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_2328 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000009936 | 1 retrocopy |
retro_mluc_2328 ,
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