RetrogeneDB ID: retro_mluc_2349

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430235:423491..424020(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000000757
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DR1
• Ensembl ID: ENSMLUG00000010684
• Aliases: None
• Description: None

Sequence

>retro_mluc_2349
ATGGCTTCCTCCTCCGGCAACGACGATCATCCGACTCTTCCCAGAGCTGCGGTCAATAAGATGATCAAAGAGACTCTCCC
CACTGTGCGGGTGGCCAGCGATGTCCGGGAGCTGGTGCTGAACGGCTGCACTGAATTCATTCACCTCATCTCTTCGGAAG
CCAAGGAGATTTGCAACCAGTCGGCCAAGAAGAACATCTCTCCGGAGCATGTCATTCAAGCCCTTGACAGTTTGGGCTTC
GGCTCTTATATCAGTGAAGCAAGAGAAGTTTTACGAGACTGCAAGACGGTAGCATTAAAAAGAAGAAAGGCCAGTTCTCG
TTTGGAAAACCTTGGCATTCCTGAAGAAGAGTTATTGAGACAACAGCAGGAATTGTTTGCCAAAGCTAGACAGCAACAAG
CACAACTGGCCCAGCCGGGATGGCTTCAACTGCAGCAAGCTGTCCAACAAGCGCAGCTTGTTGCTGCCTCAGCCAGTGCA
TCTAAACGGGGCAGGAGCTTCTCAGGATGAAGAAGAGGATGATGATATC

Alignment

ORF - retro_mluc_2349 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.18 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MASSSGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEH
          MASSSGNDD..T.PRAA.NKMIKETLP.VRVA.D.RELV.N.CTEFIHLISSEA.EICN.S.KK.ISPEH
Retrocopy MASSSGNDDHPTLPRAAVNKMIKETLPTVRVASDVRELVLNGCTEFIHLISSEAKEICNQSAKKNISPEH

Parental  VIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQE
          VIQAL.SLGFGSYISE..EVL..CKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQA.LAQ..
Retrocopy VIQALDSLGFGSYISEAREVLRDCKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAQLAQPG

Parental  WLQMQQAAQQAQLAAASASAS-NQAGSSQDEEDDDDI
          WLQ.QQA.QQAQL.AASASAS.N.AG.SQDEE.DDDI
Retrocopy WLQLQQAVQQAQLVAASASAS>NGAGASQDEEEDDDI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2349 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017815	1 retrocopy	retro_cjac_410,
Cavia porcellus	ENSCPOG00000003282	1 retrocopy	retro_cpor_518,
Loxodonta africana	ENSLAFG00000017540	1 retrocopy	retro_lafr_692,
Myotis lucifugus	ENSMLUG00000010684	1 retrocopy	retro_mluc_2349 ,