RetrogeneDB ID: retro_mluc_2376

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430276:181780..182215(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000025869
• Aliases: None
• Description: None

Sequence

>retro_mluc_2376
CAGTTTGCTGTGACTCAACCGCCCTCCCTCTCTGCATCTCTGGGAGCCACAGCCAGACTCACCTGCACCCTGAGTGGTGT
TTCTGATATTAGTGGTTACTGGATATCCTGGTACCAGCAGAAGCCAGGGAGCCCTCCCAGGTTTCTCCTGAATTTTAAAT
CAGACTCAGATAAGTACCAGGGCTCCGGAGTCCCCAGCCGCTTCTCTGGATCCAAAGACGCCTCTGCCAATGCGGGGCTC
CTGCTCATCTCGGGGCTGCAGCCTGAGGATGAGGCTGACTATTACTGTGCTACACACCATGGCAGTGGGAGCAGCTTTAG
TCATGCACAGTGTCTCAGAAGACGAGGAAGTGATAGCAAAACCTCAGAGCCCGAGGTGAGGGCTGCCTGCACTTAGGGTG
CCAATCCCTGGAGCCCACCGAGTGTCCTCTCATCA

Alignment

ORF - retro_mluc_2376 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.66 %
• Parental protein coverage: 59.18 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QPVLTQPPSLSASLGATARLTCTLSSGFNVGDYHIRWFQQKPGSPPRYLLSFKSDSDKNQGSGVPSRFSG
          Q...TQPPSLSASLGATARLTCTLS.......Y.I.W.QQKPGSPPR.LL.FKSDSDK.QGSGVPSRFSG
Retrocopy QFAVTQPPSLSASLGATARLTCTLSGVSDISGYWISWYQQKPGSPPRFLLNFKSDSDKYQGSGVPSRFSG

Parental  SKDASANAGLLTISGLQPEDEADYYCATYHGSGSSFHYSQCLRVYSSDGGGSGVSVSAGSLSQPVLTQPP
          SKDASANAGLL.ISGLQPEDEADYYCAT.HGSGSSF...QCLR...SD...S...V.A..........PP
Retrocopy SKDASANAGLLLISGLQPEDEADYYCATHHGSGSSFSHAQCLRRRGSDSKTSEPEVRAACT*GANPWSPP

Parental  SLSAS
          S...S
Retrocopy SVLSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2376 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000025869	4 retrocopies	retro_mluc_2376 , retro_mluc_2377, retro_mluc_2378, retro_mluc_2379,