RetrogeneDB ID: retro_mluc_240

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429799:189618..191772(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026022
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000003073
• Aliases: None
• Description: None

Sequence

>retro_mluc_240
ATGTCAGGAGATGCCTCCGCGGAGCAGGCACCTGAATATGTCCCAGAGAAGGTGAAGAAAGCTGAAAAGAAATTAGAAGA
GAATCCATATGTCCTTGACGCTTGGAGCATTCTCATTCGAGAGGCACAGAATCAACCTATAGACAAAGCACAGAAGACTT
ATGAACGCCTTGTTGCCCAGTTCCCCAGTTCTGGCAGATTCTGGAAACTGTACATTGAAGCAGAGATTAAAGCTAAAAAT
TATGACAAGGTTGAAAAGTTATTTCAGAGATGCCTTATGAAGGTTTTGCACATTGATTTATGGAAGTGTTATCTTTCATA
TGTCCGAGAAACCAAGGGCAAACTACCAAGTTACAAAGAGAAAATGGCTCAAGCATATGATTTTGCACTGGATAAAATTG
GGATGGAAATTATGTCTTATCAGATTTGGGTGGATTACATCAATTTCTTAAAAGACGTGGAAGCTGTTGGATCTTATGCA
GAAAATCAGAGAATAACAGCTGTCCGAAGGGTTTATCAACAAGGTTGTGTTAATCCAATGATCAACATTGAACAATTCTG
GAGGGACTATAACAAGTATGAAGAGGGTATCAATATTCATTTAGCTAAAAAAATGATTGAAGATCGGAGTAGATATTACA
CGAATGCTAGGCGTGTAGCAAAGGAATACGAGACAGTAATGAAAGGTTTGGACCGCAATGCTCCCTCAGTGCCTCCTCAG
AATACTCCTCAAGAAGCTCAGCAGGTAGATATGTGGAAGAAATACATACAGTGGGAAAAGAGTAACCCTCTTTGTACAGA
AGATCAGACCCTTATAACAAAAAGAGTTATGTTTGCCTATGAACAGTGTCTGCTTGTGCTGGGCCATCACCCTGATATTT
GGTATGAAGCCGCCCAGTATCTTGAGCAGTCAAGTAAACTGCTAGCAGAGAAGGGGGATATGAATAATGCCAAACTATTT
AGTGATGAAGCTGCTAATATATATGAAAGAGCCATAAGCACTTTATTAAAGAAGAATATGCTTCTGTATTTTGCATATGC
AGATTATGAAGAGAGTCGCATGAAGTACGAGAAAGTTCACAGTATATATAATAGACTTTTGGCAATTGAGGATATTGACC
CCACATTGGTCTATATCCAGTATATGAAATTTGCAAGAAGAGCAGAAGGTATCAAATCTGGAAGAATGATATTTAAAAAA
GCAAGAGAAGATACCAGAACCCGCCATCATGTCTACGTTACTGCAGCACTCATGGAGTATTACTGTAGTAAAGACAAATC
TGTTGCCTTGAAGATTTTTGAGCTGGGGCTAAAGAAGTATGGAGACATTCCAGAATATGTTCTGGCCTATATTGACTATC
TTTCTCACCTCAATGAGGACAATAATACCCGAGTTTTGTTTGAACGAGTTTTAACATCTGGAAGCCTTCCTCCTGAAAAG
TCAGGAGAAATCTGGGCCCGATTTCTAGCTTTTGAAAGTAATATTGGTGATCTAGCTAGTATACTCAAAGTGGAGAAAAG
ACGGTTTACAGCATTCAAGGAAGAGTATGAAGGCAAAGAAACAGCTTTACTTGTAGATAGATACAAGTCCATGGATTTAT
ATCCTTGCTCTGCAAGTGAACTAAAAGCACTTGGTTATAAGGACGTCTCCCGTGCTAAGCTAGCAGCTATAATTCCAGAC
CCAGTTGTAGCTCCTTCTATAGCGCCTGTTCTGAAAGATGAAGTGGATAGAAAACCAGAATACCCTAGACCAGATACTCA
GCAGATGATTCCATTTCAGCCACGACATTTAGCACCTCCAGGTTTACACCCTGTACCCGGTGGAGTATTCCCAGTACCAC
CTGCAGCTGCTGTTTTAATGAAACTTCTCCCACCTCCGATCTGTTTCCAGGGTCCTTTTGTACAAGTGGATGAACTGATG
GACATTTTCCAAAGATGCAAGATACCCAATACTGTTGAGGAAGCTGAGAGGCTCATTACTGCCAGAGCCCCAGAGCTCGC
TGCGGAAGGCAATGGCCCGGTGGAAAGTAATGCAGTACTCATCAAGGCCGTCAAAAGGCCCCACGAGGATTCAGATGATG
ACGAGGAAAAGGGATCTGTCGTCCCTCCTGTTCATGACATTTATAGAGCACGGCAGCAGAAGCGAATTCGGTGA

Alignment

ORF - retro_mluc_240 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.48 %
• Parental protein coverage: 99.16 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SSQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEI
          ..QA.EYVPEKVKKAEKKLEENPY.LDAWSILIREAQNQPIDKA.KTYERLVAQFPSSGRFWKLYIEAEI
Retrocopy AEQAPEYVPEKVKKAEKKLEENPYVLDAWSILIREAQNQPIDKAQKTYERLVAQFPSSGRFWKLYIEAEI

Parental  KAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY
          KAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY
Retrocopy KAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY

Parental  INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNA
          INFLK.VEAVGSYAENQRITAVRRVYQ.GCVNPMINIEQ.WRDYNKYEEGINIHLAKKMIEDRSR.Y.NA
Retrocopy INFLKDVEAVGSYAENQRITAVRRVYQQGCVNPMINIEQFWRDYNKYEEGINIHLAKKMIEDRSRYYTNA

Parental  RRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV
          RRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL.TEDQTLITKRVMFAYEQCLLV
Retrocopy RRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLCTEDQTLITKRVMFAYEQCLLV

Parental  LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY
          LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY
Retrocopy LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY

Parental  EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDK
          EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDK
Retrocopy EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDK

Parental  SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG
          SVA.KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG
Retrocopy SVALKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG

Parental  DLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASELKALGYKDVSRAKLAAIIPDPVVAPS
          DLASILKVEKRRFTAFKEEYEGKETALLVDRYK.MDLYPCSASELKALGYKDVSRAKLAAIIPDPVVAPS
Retrocopy DLASILKVEKRRFTAFKEEYEGKETALLVDRYKSMDLYPCSASELKALGYKDVSRAKLAAIIPDPVVAPS

Parental  IVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQV
          I.PVLKDEVDRKPEYP.PDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAA.VLMKLLPPPICFQGPFVQV
Retrocopy IAPVLKDEVDRKPEYPRPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAAVLMKLLPPPICFQGPFVQV

Parental  DELMEIFRRCKIPNTVEEAVRLITGGAPELAVEGNGPVESNAVLTKAVKRPNEDSDDDEEKGAVVPPVHD
          DELM.IF.RCKIPNTVEEA.RLIT..APELA.EGNGPVESNAVL.KAVKRP.EDSDDDEEKG.VVPPVHD
Retrocopy DELMDIFQRCKIPNTVEEAERLITARAPELAAEGNGPVESNAVLIKAVKRPHEDSDDDEEKGSVVPPVHD

Parental  IYRARQQKRIR
          IYRARQQKRIR
Retrocopy IYRARQQKRIR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_240 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000005640	1 retrocopy	retro_meug_1862,
Myotis lucifugus	ENSMLUG00000003073	1 retrocopy	retro_mluc_240 ,
Monodelphis domestica	ENSMODG00000009745	1 retrocopy	retro_mdom_1,