RetrogeneDB ID: retro_mluc_2413

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430348:134335..135431(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000000682
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NCAPH2
• Ensembl ID: ENSMLUG00000010610
• Aliases: None
• Description: None

Sequence

>retro_mluc_2413
GGCACGTCTCCAGAAGGCCCGATGTCCACAGGTGGGGATGAGGATGAGGATGCAGAGGGGGTGGCAGAGCTCCCTGAGGT
CCCCCTGGAGCCCCAGGAGTCCAGGAGCCCACAGCAGAGCACTGCCCAGCCCAGGAGGTTTGAGTTGAGGGAGAGGCGGG
AGGCCCTGGAGCCAGGGTCCCAGCTGAAGGAGACCCCAGACCCCTGGCAGAGCCTGGACCCCTTCAGCTCCCTGGACTCT
AAGCCCTTCAAGAAAGGTAAACCCTACTCCGTGCCCGCCTGCGTGGAGGAGAGTTCCAGGACAGAAGTGCAAGAGGAAGG
GGACCGCCAAGCTGCAGGACTTCCACCAGTGGTACCTGGCCACCTATGCTGACCATGCTGACAGCAGGAGGCTCTGGAAA
AAGGGCCCATCCTTTGCAGACATGGAGGTTCTGTACTGGAAACATGTGAGGGAGCAGCTGGAGACCCTCCGGAAACTGCA
GAGGGAGGCAGCTAAGCGGTGGCTGCCGAGGGCCGAGGAGGGGCTGTGGCCTGTTGAGGAGGACTGCCTGGAGGACTCCC
TGGAGGAGCTGGGGGCAGCAGATGACTTTCTAGAGCCCAAAGAATACGCAGAGCCTGACGGGGCAAAGCCTGAGGACGCT
GCAGACCTGGAAGCAGAGGCCATGCCGGCATCCCTGAGCTACGAGGAGCTGGTCCGGAGGAACGTGGAGCTCTTCATCAC
CACGTCTCAGAAGTTCGTCCAGGAGACGGAGCTGAGCCAGTGTGTCAGGGACTGGGAGGACAGCATCCAGCCCCTGCTCC
AGGAGCAGGAGCAGCATGTGCCCTTTGACATCCACCTGTATGGGGACCAGATGGTCTCAAGGTTCAGTCAGCTCAAACAG
TGGTGTCCCTTTGCAAAGCTGGTGGCGGGACAGCCTGCCTTCGAGGTGTGCCGCGCCATGCTGGCCTCTCTGCAACTGGC
CAATGACCACACAATAGAGATCACTCAGCAGCCAGGGCTGGAGGCAGCTGTGGACACCATGTCCCTAAGACTGCTCACAC
ACCAGCGGGCCCACAAGCACTTCCAGACCTACACCACCCGCTCCATGGCTCAGCCC

Alignment

ORF - retro_mluc_2413 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.3 %
• Parental protein coverage: 61.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GTSPEGPMPAGGDEDEDAEGVAELPEVPLEPQESRSPQQSTAQPRRFELRERREALEPVSQLKETPDPWQ
          GTSPEGPM..GGDEDEDAEGVAELPEVPLEPQESRSPQQSTAQPRRFELRERREALEP.SQLKETPDPWQ
Retrocopy GTSPEGPMSTGGDEDEDAEGVAELPEVPLEPQESRSPQQSTAQPRRFELRERREALEPGSQLKETPDPWQ

Parental  SLDPFSSLDSKPFKKGKPYSVPACVEE-VPGQKRKRKGAAKLQDFHQWYLATYADHADSRRLQKKGPSFA
          SLDPFSSLDSKPFKKGKPYSVPACVEE.VPGQK.KRKG.AKLQDFHQWYLATYADHADSRRL.KKGPSFA
Retrocopy SLDPFSSLDSKPFKKGKPYSVPACVEE>VPGQKCKRKGTAKLQDFHQWYLATYADHADSRRLWKKGPSFA

Parental  DMEVLYWKHVREQLETLRKLQRREAAKRWLPRAEEELWPVEEDRLEDSLEELGAAADDFLEPEEYAEPDR
          DMEVLYWKHVREQLETLRKLQR.EAAKRWLPRAEE.LWPV...........LGAA.DDFLEP.EYAEPD.
Retrocopy DMEVLYWKHVREQLETLRKLQR-EAAKRWLPRAEEGLWPVXXXXXXXXXXXLGAA-DDFLEPKEYAEPDG

Parental  AKPEDAADLEAEAMPASLSYEELVRKNVELFITTSQKFVQETELSQRVRDWEDSIQPLLQEQEQHVPFDI
          AKPEDAADLEAEAMPASLSYEELVR.NVELFITTSQKFVQETELSQ.VRDWEDSIQPLLQEQEQHVPFDI
Retrocopy AKPEDAADLEAEAMPASLSYEELVRRNVELFITTSQKFVQETELSQCVRDWEDSIQPLLQEQEQHVPFDI

Parental  HLYGDQMVSRFSQLHQWCPFAKLVAGQPAFEVCRAMLASLQLANDHTGEITQQPGLDAAVDTMSLRLLTH
          HLYGDQMVSRFSQL.QWCPFAKLVAGQPAFEVCRAMLASLQLANDHT.EITQQPGL.AAVDTMSLRLLTH
Retrocopy HLYGDQMVSRFSQLKQWCPFAKLVAGQPAFEVCRAMLASLQLANDHTIEITQQPGLEAAVDTMSLRLLTH

Parental  QR-HKRFQTYTAPSMAQP
          QR.HK.FQTYT..SMAQP
Retrocopy QRAHKHFQTYTTRSMAQP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2413 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010610	1 retrocopy	retro_mluc_2413 ,