RetrogeneDB ID: retro_mluc_2422

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430365:174293..175716(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CD2AP
• Ensembl ID: ENSMLUG00000009776
• Aliases: None
• Description: None

Sequence

>retro_mluc_2422
TTAGAGATAACAGATGATGGTGAAACTCATGAAGCCCAGGAGGATTCAGAATCTGTTTGGACTGGGCCCACCTTATCTTT
CCCCTCTCAGGGGAATGGGAATGAAACTGCACCCGGATCGGTGACACAGCCAAAGAAAATTCGAGGGATTGGATTTGGAG
ATATTTTTAAAGAAGGCTCTGTGAAACTTACGACAAGAGCATCCAGTAGTGAAACAGAAGAGAAAAAATCAGAAAAGCCC
TCAATCATACAGTCACTAGGATCCAGAACTCAGAACACGGAGACAACAAAATCAGACACTGAAGGTAAAACAAAAGCTAA
GGAATATTGTAGAGCGTTATTTGCCTATGAAGGTACTAATGAAGATGAACTTACTTTTAAAGAGGGAGACATAATCCACT
TGATAAGTAAGGAGACTGGAGAAACTGGCTGGTGGAAGGGTGAACTTAATGGTAAAGAAGGAGTATTTCCAGATAATTTT
GCTGTTCAGTTAAATGAACTGGATCAGGACTTTCCAAAACCAAAGAAACCACCACCTCCTGCTAAGGGTCCAGCCCCAAA
GCCTGAGCTGATATCTACAGAGAAAAAGTATTTTCCTGTAAAGCCTGAAGAAAGAGATGAAAAATCCATGCTGGACCAGA
AACCTTCTAAACCAGCTGCTCCACAAGTTCTACCCAAGAAGCCTACTCCACCCACCAAAGCCAATAATTTATTGAGATCT
TCTGGGACAGTGTACCCAAAGCGACCTGAGAAACCAGTTCCTCCACTACCACCTGTAGCCAGGATCAATGGGGAAGTGCC
TGCCATTTCATCAAAATTTGAAACTGAGCCAGTATCAAAACCAAAGTTAGATTCTGAACAGTCACCACTTAGACCAAAAT
CAGTAGATCTAGATTCATTTACAATTAGGAGCTTTAAAGAAACAGATATTGTGAATTTTGATGACATAGCTTCCTCAGAA
AACTTACTCCATCTCACTGCAAACAGACCGAAGATGCCTGGAAGAAGGTTGCCTGGCCGCTTCAATGGCGGGCATTCTCC
AACTCAAAGCCCAGAAAAAATCTCGAAGTCACCCAAAGAAGAAGATAGTGCCAACATAAAGCCATCTGAATTTAAAAAGG
ATTCTTGCAACTCTCCAAAGCCATCTCTGTACCTTTCAACACCTCCAAGTCCTTCAAAACCAAATGCGGCTAGTTTTTAA
CTCCATTAGAAATCAAAGCCAAATTAGAAGCAGACGATGGGGAAAAAAATTCCCTGGATGAAATTAAAGCTGAGATGATT
GAACTGCTGTGCATTGTGGAAGCACTGAAAAAGGAGCACGGGAAAGAACTGGAAAAACTATGAAAAGATTTGGAAGAAGA
GAAGGCTCTGAGAAGTAATCTAGATGTAGAAATCGAGAAGCTGAAAAAGCTGTCCTATCTTCT

Alignment

ORF - retro_mluc_2422 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.45 %
• Parental protein coverage: 74.41 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LEITDDGETHEAQEDSESVWTGPTLSFPSQGNGNETAPGSVTQPKKIRGIGFGDIFKEGSVKLRTRASSS
          LEITDDGETHEAQEDSESVWTGPTLSFPSQGNGNETAPGSVTQPKKIRGIGFGDIFKEGSVKL.TRASSS
Retrocopy LEITDDGETHEAQEDSESVWTGPTLSFPSQGNGNETAPGSVTQPKKIRGIGFGDIFKEGSVKLTTRASSS

Parental  ETEEKKSEKPSIIQSLGSRTQNTEITKSDTEGKTKAKEYCRALFAYEGTNEDELTFKEGDIIHLISKETG
          ETEEKKSEKPSIIQSLGSRTQNTE.TKSDTEGKTKAKEYCRALFAYEGTNEDELTFKEGDIIHLISKETG
Retrocopy ETEEKKSEKPSIIQSLGSRTQNTETTKSDTEGKTKAKEYCRALFAYEGTNEDELTFKEGDIIHLISKETG

Parental  ETGWWKGELNGKEGVFPDNFAVQLNELDKDFPKPKKPPPPAKGPAPKPEPISIEKKYFPVKPEERESDEK
          ETGWWKGELNGKEGVFPDNFAVQLNELD.DFPKPKKPPPPAKGPAPKPE.IS.EKKYFPVKPEER..DEK
Retrocopy ETGWWKGELNGKEGVFPDNFAVQLNELDQDFPKPKKPPPPAKGPAPKPELISTEKKYFPVKPEER--DEK

Parental  SMLDQKPSKPAAPQVPPKKPTPPTKVNNLLRSSGTVYPKRPEKPVPPLPPVARINGEVPAISSKFETEPV
          SMLDQKPSKPAAPQV.PKKPTPPTK.NNLLRSSGTVYPKRPEKPVPPLPPVARINGEVPAISSKFETEPV
Retrocopy SMLDQKPSKPAAPQVLPKKPTPPTKANNLLRSSGTVYPKRPEKPVPPLPPVARINGEVPAISSKFETEPV

Parental  SKPKLDSEQSPLRPKSVDLDSFTIRSFKETDIVNFDDIASSENLLHLTANRPKMPGRRLPGRFNGGHSPT
          SKPKLDSEQSPLRPKSVDLDSFTIRSFKETDIVNFDDIASSENLLHLTANRPKMPGRRLPGRFNGGHSPT
Retrocopy SKPKLDSEQSPLRPKSVDLDSFTIRSFKETDIVNFDDIASSENLLHLTANRPKMPGRRLPGRFNGGHSPT

Parental  QSPEKILKSPKEEDSANIKPSEFKKDSCNSPKPSLYLSTPSSPSKPNAAS-FLTPLEIKAKLEADDGKKS
          QSPEKI.KSPKEEDSANIKPSEFKKDSCNSPKPSLYLSTP.SPSKPNAAS.FLTPLEIKAKLEADDG.K.
Retrocopy QSPEKISKSPKEEDSANIKPSEFKKDSCNSPKPSLYLSTPPSPSKPNAAS<FLTPLEIKAKLEADDGEKN

Parental  SLDEIKAEMIELLCIVEALKKEHGKELEKLRKDLEEEKALRSNLEVEIEKLK-KAVLSS
          SLDEIKAEMIELLCIVEALKKEHGKELEKL.KDLEEEKALRSNL.VEIEKLK.KAVLSS
Retrocopy SLDEIKAEMIELLCIVEALKKEHGKELEKL*KDLEEEKALRSNLDVEIEKLK<KAVLSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2422 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009776	1 retrocopy	retro_mluc_2422 ,
Mus musculus	ENSMUSG00000061665	1 retrocopy	retro_mmus_1604,
Oryctolagus cuniculus	ENSOCUG00000005026	1 retrocopy	retro_ocun_307,
Rattus norvegicus	ENSRNOG00000011987	1 retrocopy	retro_rnor_2040,