RetrogeneDB ID: retro_mluc_2451

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430436:191412..191979(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NGDN
• Ensembl ID: ENSMLUG00000017232
• Aliases: None
• Description: None

Sequence

>retro_mluc_2451
GTGCTGGAGTCAGACCTGCCGAGAGCGGTGGCCCTTCTGAAAAACCTCCAGGAGCAGGTAATGGCTATAACTGCACAAGT
TCAAGCTTTGACAAAAAAAAAAAAAGTTCAAGCTAGAGCCTATCCTACAGAGAGGGTCTCAGCCTCTTGGAAATGAAAGA
CCAGTTGCTACTTATGTACCTTGTGGATGAGTCATCTCACCCTGGACAAAGCCTCAGAGGGTCTCTTCAGGGACATGCTG
CAGTTTTGAGACTGGTGGAGATTCGCACTGTTTTGGAAAAACTTCGTCCCATGGACCAAAAACTGAAGCATTAAATTGAC
AAACTGCTCATGACTGCAGTGACGGGCAGCCTCAGTGAGAATGACCCACTCAATTTAAGCCTCATCCCAGCAATATGATG
AGCAAGTTGAGCTCTGAGGATGAGGAAGATGAAACAAAGGAAGGACAGTCTGGGGCTTCAGGGAAGAAATCCACAAATGG
AGCAGTTAAGAAATATGTTCCACCCGCTTGGTTCCAGTACGTTATGATGAAATAGAGGCTGAGCGGGAGAAGAAGCATCT
AGAACGG

Alignment

ORF - retro_mluc_2451 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.41 %
• Parental protein coverage: 59.25 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  VLESDLPRAVALLKNLQEQVMAVTAQIQALTKK--VQARTYPTEK-GLSLLEVKDQLLLMYLMDLSHLIL
          VLESDLPRAVALLKNLQEQVMA.TAQ.QAL.....VQAR.YPTE..GLSLLE.KDQLLLMYL.D.S....
Retrocopy VLESDLPRAVALLKNLQEQVMAITAQVQALXXXXXVQARAYPTER<GLSLLEMKDQLLLMYLVDESSHPG

Parental  DKASGGSLQGHAAVLRLVEIRTVLEKIRPLDQKLKYQIDKLVKTAVTGSLSENDPL-RFKPHPSNMMSKL
          ....G.SLQGHAAVLRLVEIRTVLEK.RP.DQKLK..IDKL..TAVTGSLSENDPL..FKPHPSNMMSKL
Retrocopy QSLRG-SLQGHAAVLRLVEIRTVLEKLRPMDQKLKH*IDKLLMTAVTGSLSENDPL<QFKPHPSNMMSKL

Parental  SSEDEEDEAEEGQSGAAGKKSANGAVKKYVPP-RLVPVHYDETEAEREKKRLER
          SSEDEEDE..EGQSGA.GKKS.NGAVKKYVPP.RLVPV.YDE.EAEREKK.LER
Retrocopy SSEDEEDETKEGQSGASGKKSTNGAVKKYVPP<RLVPVRYDEIEAEREKKHLER

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2451 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000017232	1 retrocopy	retro_mluc_2451 ,