RetrogeneDB ID: retro_mluc_2497

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430562:112984..113792(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022479
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: POLR1E
• Ensembl ID: ENSMLUG00000012688
• Aliases: None
• Description: None

Sequence

>retro_mluc_2497
CTGAACTCCAGGAGAATGAACAGAGTTGGCAATGAATCTTTGAATGGTGCAGTAGCTAAAGCCGCAGAGAGTATTATTGA
TACAAAGGGTGTGACCGCTCTGGTCAATGATGCCCTCCACGATAACTTGCAAGACGACTCCCTCTGCCTTCCTCCCTGCC
ACGCGGATGCAGCCAAGCCTGAAGACGTGTATAAATTTGAAGACCTTCTTTCCCCTGTGGAGTATGAAGCTCTTCGGAGC
CCATCTGAAGCTTTCAGGAATGTCACATCAGAAGAAATACTGAAGATGATCGAAGAGAATAGCCACTGCTCCTCTGTCAT
AGAAGCGTTGAAGTCTTTGCCATCAAGTGAGGAGAGCCGAGACCGCCAGGCCCGATGCATATGGTTTCTGGACACACTCA
TCAAGTTTCGAGCACAGAAAGTGATTAAGCGGAAAAGTGCCCTGGGACCTGGAGTTCCATACATCATCACCACCAAACTG
CTGAAGCACTTCACCTGCGTGACCTACAACAATGACAGTTTACGCAACTTAATTTCCGATTCCATGAAGGCAAAGATCAT
TGCATATGTGATCGTACTCGCCTTGCATATAAACGACTTCCAGATTGACCATGACATTGTTACAGAGGGACCTGAAGCTC
AGTGAGAAAAGGATGCTTGAGATAGCAAAGGCCATGAGGCTGAAGATCTCTAAGCGAAAGGTGTCTCTGGCAGCCGGCGG
GGAGGAGGAGCACAAACTGGGTACTCTGTGCATCCCGCTGCCTCCAGCCCAGACCTTGGACTGCCAGTCAAAGCGGAGGA
GACTCACG

Alignment

ORF - retro_mluc_2497 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.3 %
• Parental protein coverage: 61.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LNSRRMNRVGNESLNRAVAKAAESIIDTKGVTALVNDALHDNLQDDSLCLPPCHADAAKPEDVYKFEDVL
          LNSRRMNRVGNESLN.AVAKAAESIIDTKGVTALVNDALHDNLQDDSLCLPPCHADAAKPEDVYKFED.L
Retrocopy LNSRRMNRVGNESLNGAVAKAAESIIDTKGVTALVNDALHDNLQDDSLCLPPCHADAAKPEDVYKFEDLL

Parental  SPAEYEALRSPSEAFRNVTSEEILKMIEENSHCSFVIEALKSLPSSEESRDRQARCIWFLDTLIKFRAQK
          SP.EYEALRSPSEAFRNVTSEEILKMIEENSHCS.VIEALKSLPSSEESRDRQARCIWFLDTLIKFRAQK
Retrocopy SPVEYEALRSPSEAFRNVTSEEILKMIEENSHCSSVIEALKSLPSSEESRDRQARCIWFLDTLIKFRAQK

Parental  VIKRKSALGPGVPHIITTKLLKHFTCVTYNNGSLRNLISDSMKAKIIAYVIVLALHINDFQID-LTLLQR
          VIKRKSALGPGVP.IITTKLLKHFTCVTYNN.SLRNLISDSMKAKIIAYVIVLALHINDFQID..TLLQR
Retrocopy VIKRKSALGPGVPYIITTKLLKHFTCVTYNNDSLRNLISDSMKAKIIAYVIVLALHINDFQID>MTLLQR

Parental  DLKLSEKRMLEIAKAMRLKISKRKVSLAAGGEEEHRLGTLCIPLPPAQTLDRQSKRRRLT
          DLKLSEKRMLEIAKAMRLKISKRKVSLAAGGEEEH.LGTLCIPLPPAQTLD.QSKRRRLT
Retrocopy DLKLSEKRMLEIAKAMRLKISKRKVSLAAGGEEEHKLGTLCIPLPPAQTLDCQSKRRRLT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2497 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012688	1 retrocopy	retro_mluc_2497 ,
Otolemur garnettii	ENSOGAG00000012981	1 retrocopy	retro_ogar_495,