RetrogeneDB ID: retro_mluc_2501

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430578:83990..84566(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CLPP
• Ensembl ID: ENSMLUG00000007981
• Aliases: None
• Description: ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:G1PAH2]

Sequence

>retro_mluc_2501
GTGTGTGTTATGGGTCCGATCGGTGACAGTGTGGCCAGGCTGGTTATAGCACAACGGCTGTTCCTGCAGTCTGAGAGCAA
CAAGAAGCCCATCCACATGTACATCAACAGACCTGGCAGCATAGTGACCTTGGGCTTGGCCATCTACGACAGGATGCAGT
ACATCCTGAACCCCATCTTCACGTGGTGCGTTGGCCAGGCCACCAGCATGGGCTCCCTGCTTCTCGCTGTAGGCACCCTA
GGCATGCGCCACTCACTCCACAACTCACACATCATGATCCACAAGCCTTCTGGGGGTGCCCGGGGCCAAGCCACAGACAT
CACCATTCAGGTAGAAGAGATCATAAAACTCAAGAAGCAGCTCTACAGCATCTATGCCAAGCACACCAAACAGAGCCTAC
AGGTGATTGAGTCAGCCATGGACAAAGACCACTACATGAGCCCCATGGTGCCCTAGGAGTTTGGCATCTTAGACAAGGTT
CTGGTGCACCCACCTCATGATGGTGAGGATGAGCCTGAACTAGTGCAGAAGGAGCCTGTGACCGTGACAGCGCCAGAACC
TGCCCCAGTGAGCACT

Alignment

ORF - retro_mluc_2501 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.46 %
• Parental protein coverage: 70.7 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VCVMGPIDDNVASLVIAQLLFLQSESNKKPIHMYINSPGGLVTSGLAIYDTMQYILNPICTWCVGQAASM
          VCVMGPI.D.VA.LVIAQ.LFLQSESNKKPIHMYIN.PG..VT.GLAIYD.MQYILNPI.TWCVGQA.SM
Retrocopy VCVMGPIGDSVARLVIAQRLFLQSESNKKPIHMYINRPGSIVTLGLAIYDRMQYILNPIFTWCVGQATSM

Parental  GSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIIKLKKQLYTIYAKHTKQSLQVIESAM
          GSLLLA.GT.GMRHSL.NS.IMIH.PSGGARGQATDI.IQ.EEIIKLKKQLY.IYAKHTKQSLQVIESAM
Retrocopy GSLLLAVGTLGMRHSLHNSHIMIHKPSGGARGQATDITIQVEEIIKLKKQLYSIYAKHTKQSLQVIESAM

Parental  ERDRYMSPMEAQEFGILDKVLVHPPQDGEDEPELVQKEPVAAATAAEPAPVST
          ..D.YMSPM...EFGILDKVLVHPP.DGEDEPELVQKEPV...TA.EPAPVST
Retrocopy DKDHYMSPMVP*EFGILDKVLVHPPHDGEDEPELVQKEPV-TVTAPEPAPVST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2501 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000016699	1 retrocopy	retro_cjac_2380,
Microcebus murinus	ENSMICG00000006284	1 retrocopy	retro_mmur_1142,
Myotis lucifugus	ENSMLUG00000007981	1 retrocopy	retro_mluc_2501 ,
Xenopus tropicalis	ENSXETG00000005576	1 retrocopy	retro_xtro_53,