RetrogeneDB ID: retro_mluc_251

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:22443237..22443873(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029319
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000004055
• Aliases: None
• Description: None

Sequence

>retro_mluc_251
ATGGCTCAGGCGAAGATCAACGCGAAAGCCAACGAGGGCCGCTTCTGCCGCTCCTCCTCCATGGCCGACCGCTCCAGCCG
CCTGCTGGAGAGCCTGGACCAGCTGGAGCTCAGGGTGGAAGCTTTAAGAGAAGCTGCAACTGCCATTGAGCAAGAGAGGG
AAATCCTCCTGGAAATGATCCACAGTATCCAGAATAGTCAGGACATGAGGCAGATCAGCGATGGAGAAAGAGAAGAATTA
AATCTGACCACAAACCGTCTGATGGGACGAACCCTCACTGTTGAAGTTTCAGTGGAAACCATTAGAAACCCTCAGCAGCA
GGAATCCCTAAAGCACGCCACCAGGATTATCGATGAGGTGGTCAGTAAGTTTCTGAATGATTTGGGAAATGCCAAGAGTC
ACTTGATGTCGCTGTACAGTGCGTGTTCGTCTGAGGTGCCGCCTGGGCCAGTTGATCAGAAGTTTCAATCCATAGTCATT
GGCTGTGCACTTGAAGATCAGAAGAAAATTAAGAGACGCTTTGAGACTCTGCTTAGAAATATTGAAAGCTCCGACAAGGC
CATCAAGCTGCTCGAGCATTCTAAAGGAGCGGGCTCCCTAGCTCTGCAACAGAATGCTGACAGCAGATTTAATTAG

Alignment

ORF - retro_mluc_251 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.05 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAQAKINAKANEGRFCRSSSMADRSSRLLESLDQLELRVEALREAATAIEQEREILLEMIHSIQNSQDMR
          MAQAKINAKANEGRFCRSSSMADRSSRLLESLDQLELRVEALREAATAIEQEREILLEMIHSIQNSQDMR
Retrocopy MAQAKINAKANEGRFCRSSSMADRSSRLLESLDQLELRVEALREAATAIEQEREILLEMIHSIQNSQDMR

Parental  QISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEVVSKFLNDLGNAKSHLMSLYS
          QISDGEREELNLT.NRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEVVSKFLNDLGNAKSHLMSLYS
Retrocopy QISDGEREELNLTTNRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEVVSKFLNDLGNAKSHLMSLYS

Parental  ACSSEVPPGPVDQKFQSIVIGCALEDQKKIKRRLETLLRNIESSDKAIKLLEHSKGAGSLALQQNADSRF
          ACSSEVPPGPVDQKFQSIVIGCALEDQKKIKRR.ETLLRNIESSDKAIKLLEHSKGAGSLALQQNADSRF
Retrocopy ACSSEVPPGPVDQKFQSIVIGCALEDQKKIKRRFETLLRNIESSDKAIKLLEHSKGAGSLALQQNADSRF

Parental  N
          N
Retrocopy N

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_251 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000028759	1 retrocopy	retro_cfam_252,
Myotis lucifugus	ENSMLUG00000004055	1 retrocopy	retro_mluc_251 ,
Oryctolagus cuniculus	ENSOCUG00000004815	1 retrocopy	retro_ocun_823,
Procavia capensis	ENSPCAG00000011588	1 retrocopy	retro_pcap_295,