RetrogeneDB ID: retro_mluc_2546

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430878:86510..89223(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: THOC2
• Ensembl ID: ENSMLUG00000013656
• Aliases: None
• Description: None

Sequence

>retro_mluc_2546
TTGGACTTATGTTGGCTTCTCAGCGAAAACAAGAGCCACGGCAGTTCCACTTACAGAGATTTCCAGCAAGCTCTCTATGA
GTTATCACACCATGTCATTCAAGGAAATCTGAAGCCCGAACAAGCAGCTGATGTTTTCAATGACATCAGCGAATTTCATG
AGGATGTGCCTTCCATTCTTGTTGATGTCTTTTGCATGTTAGATGTTGAGACAACCGTTTTAGAAGGGAAGAGCAAGAGA
GACTGTTTTACACAATTGGTATCAGCGTCTTCGTATTTCATTTCAGACACGATTCTAAAGGAACTCCTGAATCCAGAAAC
ATTGGAATCATTAGGACTTATCAAACAATCATGGCAATTCCATCAAACATCAGTGAAAATCAAGACAAAACTCTTTTATA
TGCAGCAAAAGTTCAACTTGTTAAGAGAAGAGAATGAAGGCTATGCTAAGCTGATTGTTGAATTGAGGCAAGATTTATCG
GGAAATATGACTTGTGATTTAATCTTACAAAATATCAAATCCTTAATAGGATGCTTTCATCTAGATCCCAATAGAGTTTT
GGGTGTCATTTTAGAAGTGTTTGAATGCAGACCAGAATGTGATAACTTCTTTATATGTTTATTAGAATCTTGTGTGAATA
TGTGTGAGCCGCAAACACTTTGTCATATACTTGGGTTCAAATTCAAGTGTTACCAGGAGCTGAATGGAAAGACTCCTTCA
TCTTTCTGAAGAGTTGCAGAAGTGCTCCTACAAGGTAATCTTATTGATTTAAATGATCTCTATGTGCATCTTCTTCCAAC
TGATAATTGCATGATGGATGAATATAAACGAGAAATGGTGGAAGCTAAGGCCATTCTTCGAAAACTTACGGTGGCTGTAT
TGTTCTGAAAAAATGGATAAGCAAGATAAGGCAAAGGAAGAGGAGGAGGAGACAGTAGAAAAGCCACCTGACAACCAAAA
ACTTGGTTCGTTAGAAGCCTTATTAAAGATTGGCGATTGGCAGCATGCGCAGAACATGATGGATGGGATGCCTCCATACT
ATGCTGCTTCCCACAAGATGATAGCTCTTGCTATTTGCAAGCTTATTCACATAACTATTGAGCCTCTCTACCAAAGAGTT
GGCATTCCTAAAGGTGCTGAAGGCTCACCTGTTCGTGCTTTGCAAAATAAGAAAGCGCTAAAACAAGCAGGGAGCTTTGA
GGATTTGAGGACAGATGCCTTCAATATGTTCTGTTACCTCGGTCCCCACCTTTCTTGGGATCCCATTTTATTTGCAAAAG
TGGTGCGCATAGGCCAATCCTTTATGAAGGAGCTTCAGTCTGATGGAAGGAAACAAGAGGTTCAAGAGAAAGTGGACGTT
ATTCTTAGCTGTTTACTTGGCATTACTGACCAGGCCCTACTTCCATCTCTTTCTCTAATGGACTGCAATGCTTGTATGAC
TGAGGAACTATGGGGAATGTTAAAAACATTTCCATATCAGCATAGATATCATCTGTATGGCCAGTGGAAGAATGAAACTT
ACAACAGGTCCCTACTTTTAGTAAAAGTTAAAGCTCTAACAATAGACCAAGCTAGAGATATCATGAACCATCTCACCAAG
GAAAATGTGAGGCCTTCTGGAAGACAAATTGGGAAATTGAGCCACAGCAATCCAACTATTCTGTTTGATTATATCTTGGC
AAAAATACAGATGTTGGCACCTGTAGTAGATTCACTGGAATGCCTCACCTCATTGAATTACGATGTCTTGGCCTATTGTA
TCATTGAGGCTTCAGCAAATCCAGAAAAGGGAAGGATGACACATGACGATACAACCAGTTCAAGCTGGCTTCGGCCTCTT
GTTAGTTTCTGTGCTGCAGTCTTTCCTAAATATCCAATGGATCTGGCTGGTCTTCTGCAATATGTGGCTCATCAGCTCAA
GGCAGGCAGAAGTATTGGCCTGCTCATATTGCAAGAAGTGGTACATAAAATGGCAGGAATAGAAATCACTGGGGAAGAGA
CGATGACAACGGAGCAACTAGAGGCCATGACTGGTGGAGAGCAACTGAGAGCTGAGGGAGGTTCTTGTGGCCAGACCAGA
AACACTAAAAAATCCTCCCAGAGATTAAAGGATGCCCTATTGGACTATGACCTTGCTCTTCCCCTTGTTTTGATGATAGC
TCAGCAGGGGGATAGGGTGATCTTACAGGAAGGTAGAGAGAAAGATGTGGAACTAGAGGGAAAGCTCTATGACCAGTGTC
ATGATACCTTGGTACAGTTTGGTGGATTTTTAGCATTGAATCTAAGCACAGAAGAGCACACAAAGAGAGTGCTTTCGATT
GATGTGCTCTATCACGAATTTCATATACCCCATGATGCAGCATTTTTCTTGTCTAGGCCAACGTATGCACGCCATATCTC
ATCCAAATGTGATGAACTTAAAAGATCAGACAAGGGAAGTAAACAGCAACATAAAGTCCACAAGTACATAGCATCATGTG
AAATGGTGATGGTGCCTGTCCGTGAAGCGGTAGTCTCATTGCCCGTTTCCAATGTCTGGGATGACATCAGCCCTCGATTC
TATGCCACATTCTGGTCACTGACAACGTATGACCTTGCAGTTCCACACACCAGCTATGAACGGGAAGTCAGTAAACTTAA
AGTCCAGATGAAAGCACTTGATGACAATTAAGAAATGGCTCCAAAGAAAAAGAAAAAAGAAAAGGAGCGCTGT

Alignment

ORF - retro_mluc_2546 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.12 %
• Parental protein coverage: 57.91 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LHLCRILSENKSHDSSTYRDFQQVLYELSYHVIKGNLKHEQASNVFNDISEFREDLPSILADVFCILDIE
          L.LC..LSENKSH.SSTYRDFQQ.LYELS.HVI.GNLK.EQA..VFNDISEF.ED.PSIL.DVFC.LD.E
Retrocopy LDLCWLLSENKSHGSSTYRDFQQALYELSHHVIQGNLKPEQAADVFNDISEFHEDVPSILVDVFCMLDVE

Parental  TNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNL
          T..LE.KSKRD.FTQLV.A..Y..SDT.LKE.L.PETLESLGLIKQS.QF.Q.SVKIKTKLFY.QQKFNL
Retrocopy TTVLEGKSKRDCFTQLVSASSYFISDTILKELLNPETLESLGLIKQSWQFHQTSVKIKTKLFYMQQKFNL

Parental  LREENEGYAKLIAELGQDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLES
          LREENEGYAKLI.EL.QDLSGN.T.DLIL.NIKSLIGCF.LDPNRVL.VILEVFECRPE.D.FFI.LLES
Retrocopy LREENEGYAKLIVELRQDLSGNMTCDLILQNIKSLIGCFHLDPNRVLGVILEVFECRPECDNFFICLLES

Parental  YMSMCEPQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQVNLIDLDDLYVHLLPADNCIMDEHKREIV
          ...MCEPQTLCHILGFKFK.YQE..G.TPSS..RVA.VLLQ.NLIDL.DLYVHLLP.DNC.MDE.KRE.V
Retrocopy CVNMCEPQTLCHILGFKFKCYQELNGKTPSSF*RVAEVLLQGNLIDLNDLYVHLLPTDNCMMDEYKREMV

Parental  EAKQIVRKLTMVVL-SSEKMDEREKEKEKEDDKVEKPPDNQKLGLLEALLKIGDWQHAQNIMDQMPPYYA
          EAK.I.RKLT..VL.S...........E.E...VEKPPDNQKLG.LEALLKIGDWQHAQN.MD.MPPYYA
Retrocopy EAKAILRKLTVAVL>SEKMDKQDKAKEEEE-ETVEKPPDNQKLGSLEALLKIGDWQHAQNMMDGMPPYYA

Parental  ASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLS
          ASHK.IALAICKLIHITIEPLY.RVG.PKGA.GSPV.ALQNK.A.KQA.SFEDLR.D.FNMFCYLGPHLS
Retrocopy ASHKMIALAICKLIHITIEPLYQRVGIPKGAEGSPVRALQNKKALKQAGSFEDLRTDAFNMFCYLGPHLS

Parental  HDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVILSCLLSITDQVLLPSLSLMDCNACMSEELWGMFK
          .DPILFAKVVRIG.SFMKE.QSDG.KQE..EK..VILSCLL.ITDQ.LLPSLSLMDCNACM.EELWGM.K
Retrocopy WDPILFAKVVRIGQSFMKELQSDGRKQEVQEKVDVILSCLLGITDQALLPSLSLMDCNACMTEELWGMLK

Parental  TFPYQHRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYI
          TFPYQHRY.LYGQWKNETYN...LLVKVKA.TID.A..IM..LTKENV.PSGRQIGKLSHSNPTILFDYI
Retrocopy TFPYQHRYHLYGQWKNETYNRSLLLVKVKALTIDQARDIMNHLTKENVRPSGRQIGKLSHSNPTILFDYI

Parental  LSQIQKYDNLITPVVDSLKYLTSLNYDVLACILLNCIIEALANPEKERMKHDDTTISSWLQSLASFCGAV
          L..IQ.......PVVDSL..LTSLNYDVLA........EA.ANPEK.RM.HDDTT.SSWL..L.SFC.AV
Retrocopy LAKIQ----MLAPVVDSLECLTSLNYDVLAYCII----EASANPEKGRMTHDDTTSSSWLRPLVSFCAAV

Parental  FRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEIT--EEMTMEQLEAMTGGEQLKAEGGYFG
          F.KYP.DLAGLLQYVA.QLKAG.S..LLIL.EVV.KMAGIEIT..E.MT.EQLEAMTGGEQL.AEGG..G
Retrocopy FPKYPMDLAGLLQYVAHQLKAGRSIGLLILQEVVHKMAGIEITGEETMTTEQLEAMTGGEQLRAEGGSCG

Parental  QIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASN
          Q.RNTKKSSQRLKDALLD.DLALPL.L..AQQ...VI.QEG.EK...L.GKLYDQCHDTLVQFGGFLA.N
Retrocopy QTRNTKKSSQRLKDALLDYDLALPLVLMIAQQGDRVILQEGREKDVELEGKLYDQCHDTLVQFGGFLALN

Parental  LSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGSKQQHKVHKYITSCEMVM
          LSTE...KRV.SIDVL..EFH.PHDAAFFLSRP.YA.HISSK.DELK.S.KGSKQQHKVHKYI.SCEMVM
Retrocopy LSTEEHTKRVLSIDVLYHEFHIPHDAAFFLSRPTYARHISSKCDELKRSDKGSKQQHKVHKYIASCEMVM

Parental  APVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYEREVSKLKVQMKAIDDNQEMPPNKKKKE
          .PV.EAVVSL.VS.VWDDISP.FYATFWSLT.YDLAVPHTSYEREVSKLKVQMKA.DDN.EM........
Retrocopy VPVREAVVSLPVSNVWDDISPRFYATFWSLTTYDLAVPHTSYEREVSKLKVQMKALDDN*EMAXXXXXXX

Parental  KERC
          .ERC
Retrocopy XERC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2546 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013656	4 retrocopies	retro_mluc_2531, retro_mluc_2546 , retro_mluc_2599, retro_mluc_2606,
Mus musculus	ENSMUSG00000037475	1 retrocopy	retro_mmus_172,
Rattus norvegicus	ENSRNOG00000007315	1 retrocopy	retro_rnor_89,