RetrogeneDB ID: retro_mluc_2558

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430939:5888..7566(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026868
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MARVELD2
• Ensembl ID: ENSMLUG00000003819
• Aliases: None
• Description: None

Sequence

>retro_mluc_2558
ATGTCTTCAAAGGATGGGAGATCCAGGAATTGAGACAGGCACTACAATGACCTCCCCAGGGACTTGGCCCATGAAGATGG
CACCATAAGAACCCTCCAGACTCTCCCTGACAGTGAGCTGGCTGTGAGCGCTGATACTTTGCCACCACCCCCTCTCCCAT
TACAGCCACCTTTTGGCCCTGACTTCTACTCAAGTGACACAGAGGAACTGGCCATAGCACCAGACCTCAAACCCGTAAGG
CGCTTCATCCCTGAGTCCTGGAAGTACTTCTTCAGAGGGAAGAAAAGGGACCCAGAATGGGATAAGCTGGCGTCAGACAT
CAGATACATCTCAGACTGAGTGGAATATTCGCCTCCATCCTCTCCAGGGAGACCAAACCACCACTCACCCCCCAACTCCG
ACAAAGATCCTTATGGAGGGTCAGAAGGAACCTTTAATTCCTGGAAAGAGGCTGAAGTGATGCTTTCCCAGGATCCCTAT
GGGTCTCTGGGCCGACACACACAAACGGCTCTAACGTACAGTGAGAAGGTGGAGGCCTACAACCTGAGGTACTCCTACAT
GAAGTCGTGGCCTGGCCTGCTGAGAATCCTCGGGGTGGTGGAGCTGCTGCTGGGGGCGGGCGTCTTCGCCTGTGTCACAG
CTTATGTTCACAAGAACAGTGAGTGGTACAACATGTTTGGCTATTCCCCGCCCACGGCCATGGGAGGCTTTGGTGGCCTG
GGCAGTGCATATGGGGGCTACTACTACAGTGGCCCCAAAACTCCTTTTATACTCGTGGTTGCTGGATTAGCTTGGATTAC
CACCATTATTATTCTGGTTCTTGGCATGTCCATGTATTATCAGACAATTCTTTTGGACTCTAACTGGTGGCCCCTGACTG
AGTCTGGAATTAACATTGCCTTGTTTATTTTGTATATGGCTGCAGCCATAGTCTATGTGAATGATATCAACCGAGGTGGA
CTCTGCTACTATCCAGTATTTAATACACCAATGAATGCAATGTTCTGTCGGGTAGAAGGAGGACAGACAGCAGCGATGGT
CTTCCTGTTTGTCACCATGATTGTTTATTCCATCAGTGCTTTGGTTTGCCTAAAGTTATGGAGGCATGAGGCAGCTCGGA
GACATAGAGAATACATGGAACAACAGGAGATAAGTGAGCCATCATTTCCACCGAAAAGAAAAATGTGTGAAATGGCCATC
GGCGGTGACAGACAGAGAGACCAAGAAGTTCATTTCAAAGAATTGAGACCAACAAGAATGAAACCTGAAATACTGAGTGG
ACATGTCCCCTCAGGCCACATTCCCAAACCTATCATGTTGCCTGACTATGTGGCAAAATACCCTGTGATTCGGACAGATG
ATGAACGGGGGCGCTCTAAGGCTGTGTTCCAAGACCAGTTTTCAGAGTACAAGGAGCTCTCTGCAGAAGTGCAGGCCGTC
TTGAGGAAGTTTGATGAGCTGGACACAGTGATGAGCAGACTGCCACATCATTCGGGAAACCAACAGGAACATGAGAGAAT
TTCAAGAATCCATGAAGAATTTAAGAAAAAAAAGAAGGACCCTACGTTTCTGGAAAAAAATAGAGCGCTGTGATTATCTA
AAGAATAAACTTTCTCACATAAAGCAAAGAATTCAAGAATATGATAAAGTAATGAATTGGGTTGTACAAGCTTATTCT

Alignment

ORF - retro_mluc_2558 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.04 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSSKDGRSRNRDRHYNEVSRDLAHEDGTIRTLQTLRDSELAVSADPLPPPPLPLQPPFGPDFYSSDTEEP
          MSSKDGRSRN.DRHYN...RDLAHEDGTIRTLQTL.DSELAVSAD.LPPPPLPLQPPFGPDFYSSDTEE.
Retrocopy MSSKDGRSRN*DRHYNDLPRDLAHEDGTIRTLQTLPDSELAVSADTLPPPPLPLQPPFGPDFYSSDTEEL

Parental  AIAPDLKPVRRFVPESWKHFFRGKKKDPEWDKPVSDIRYISDGVECSPPSSPGRQNHHSPSNSDKDPYGG
          AIAPDLKPVRRF.PESWK.FFRGKK.DPEWDK..SDIRYISD.VE.SPPSSPGR.NHHSP.NSDKDPYGG
Retrocopy AIAPDLKPVRRFIPESWKYFFRGKKRDPEWDKLASDIRYISD*VEYSPPSSPGRPNHHSPPNSDKDPYGG

Parental  SEGTFNSRKEAEAMLPQDPYGSLGRHTQTALTYSEKVEAYNLRYSYMKSWPGLLRILGVVELLLGAGVFA
          SEGTFNS.KEAE.ML.QDPYGSLGRHTQTALTYSEKVEAYNLRYSYMKSWPGLLRILGVVELLLGAGVFA
Retrocopy SEGTFNSWKEAEVMLSQDPYGSLGRHTQTALTYSEKVEAYNLRYSYMKSWPGLLRILGVVELLLGAGVFA

Parental  CVTAYIHKDSEWYNMFGYSSPTAMGGFGGLGSAYGGYYYSGPKTPFILVVAGLAWITTIIILVLGMSMYY
          CVTAY.HK.SEWYNMFGYS.PTAMGGFGGLGSAYGGYYYSGPKTPFILVVAGLAWITTIIILVLGMSMYY
Retrocopy CVTAYVHKNSEWYNMFGYSPPTAMGGFGGLGSAYGGYYYSGPKTPFILVVAGLAWITTIIILVLGMSMYY

Parental  RTILLDSNWWPLTEFGINIALFILYMAAAIVYVNDINRGGLCYYPVFNTPMNAMFCRVEGGQTAAMVFLF
          .TILLDSNWWPLTE.GINIALFILYMAAAIVYVNDINRGGLCYYPVFNTPMNAMFCRVEGGQTAAMVFLF
Retrocopy QTILLDSNWWPLTESGINIALFILYMAAAIVYVNDINRGGLCYYPVFNTPMNAMFCRVEGGQTAAMVFLF

Parental  VTMIVYLISALVCLKLWRHEAARRHREYMEQQEISEPSFPSKRKMCEMAIGGDRQRDQEVHFKELRPTNM
          VTMIVY.ISALVCLKLWRHEAARRHREYMEQQEISEPSFP.KRKMCEMAIGGDRQRDQEVHFKELRPT.M
Retrocopy VTMIVYSISALVCLKLWRHEAARRHREYMEQQEISEPSFPPKRKMCEMAIGGDRQRDQEVHFKELRPTRM

Parental  KPEILSGHIPSGHIPKPIMLPDYVAKYPVIRTDEERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAV
          KPEILSGH.PSGHIPKPIMLPDYVAKYPVIRTD.ER.R.KAVFQDQFSEYKELSAEVQAVLRKFDELD.V
Retrocopy KPEILSGHVPSGHIPKPIMLPDYVAKYPVIRTDDERGRSKAVFQDQFSEYKELSAEVQAVLRKFDELDTV

Parental  MSRLPHHSGNQQEHERISRIHEEFKKKKKDPTFLEKK-ERCDYLKNKLSHIKQRIQEYDKVMNWDVQGYS
          MSRLPHHSGNQQEHERISRIHEEFK...KDPTFLEK..ERCDYLKNKLSHIKQRIQEYDKVMNW.VQ.YS
Retrocopy MSRLPHHSGNQQEHERISRIHEEFKXXXKDPTFLEKN>ERCDYLKNKLSHIKQRIQEYDKVMNWVVQAYS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2558 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002123	1 retrocopy	retro_mluc_248,
Myotis lucifugus	ENSMLUG00000003819	3 retrocopies	retro_mluc_2539, retro_mluc_2558 , retro_mluc_2559,