RetrogeneDB ID:

retro_mluc_256

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430250:305987..308411(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000024174
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:PDE8B
Ensembl ID:ENSMLUG00000016798
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_256
ATGGGCTGCGCCCCGAGCGTCCACATTTCCTCCGAGGCCCCGGGTGCGTACCTGGGCAGCAAAGAGGAGGAGGATGCGCA
GGACTCCTGGGCGCTGCTGCAGGGCGCCGGCCTCCCCTCGGACCCCTACCTGCCTCCCGGCAAGATACCCACGTCGGACG
TGCAGTTCGGCCCCATGAGGTTTCACCCGGATCAGCTCCAGGTGCTGCTGGCGTTCAGCAAGGACGATAACCAGTGCAAG
GCCTTCCGCCAGGCCTGCGACCAGGCCGGGTTCAAGTGCACGCTCACCAAGGAGGTGCAGGCGGTGCTGACCTGCTTCCT
GTCGACGCACCACGACATCGTCATCCTGGACCATAGACACCCCCGGCAGCTGGACGCGCGGGCGCTGTGCAGGGCCATCC
GATCGTCCCAGGTCTCCGAGAACACGGTCATTGTCGGGGTGGTGCGCCGGCAGGATGGGGAGCTGCCCGTGATGCCCCTC
CTCACCACCGGCTTCACCAGGCGCTACGTGGAGGACCCCAGCCCCCTGGCCTGCTACACGGAGCTGCTGCAGCTGCAGTT
CGGGGAGGTGCGGTCCCAGCTGAAGCTCAGGGCTTGCAACTCCATCTTCACGGCCTTGGAGAAAAGCCAGGACGCCGTGG
AGATCACAGGCGAGGACCACCTGGTGCAGTACGTGAACCCCGCGTTTGTAACCACCGTGGGCTGTGACTCTAATGAGCTG
GTCGGGAAGGAGTTAGCAAAACTCCCTGTGGGCGAGAAAAAGTCCGAGTTGTTCCAGACGATCAACTCATGCATCACGGA
GGGCAAGGGGTGGCAGGGCGTCTACTGTGCCAAAAACGGAGACAACACCCAGCAGAACGTGAAGGTCATCCCGGTGAACG
GGCAGGGAGGGAAGATCAGACACTATGTGTCCATCATCCGGCTGAGCAATGGGAACAGCAAGGCCGGCCTGCAGGCGGAC
TCGCACATGGACAGCCAGGTAGGGAAACTGAGGGACAGGAGGAAAAGCTCTCTCGGCGGCAGGAGCGTGGGCTCCCGGGC
CAGTGAAGTGGCCGGCCAGAGGCGCTACTCCTCGCTGGCCCGGATTCACTCGGTGACCATGGAGGCGCCCATCACCAAGG
TGATCAACATCATCAGTGCCGCCCAGGAGAACAGCTCCGTGCCCGTGTCGGAAGCCCTGGACCGGGCGCTGGAAATTCTG
AGAACCACGGAGTTATATTCCCCGCAGTTCGGGGCGAAGGATGAGGATCCTCACGCCAATGACCTCCTCGGGGGCCTGAT
AGTCAATGGTCTGCGAAGGCTCTCTGGGAACGAGTACGCTCTTTCAGCCAAAAACCTCCCGCGAGCGTCCAGCAGCATGA
CGGCCTCCCTGCCCCTCCACGACGTCCCGAAGCATATCGCTGAGGCCCTGGAGAACGAGGACTCCTGGGAATTTGACATT
TTTGAACTGGAGGCTGCCACGCAGAAAAGGGCTTTGAGTTACCTTGCTATCAAAATCTTTACCCGCTTTGGCATCTGTGA
ATTCTTAAAGTGCCCGGAGCCAACCCTGAGGCTGTGGTTGCAGATGATCGAATCCACTTACCATTCCTCTAACCCCTACC
ACAACGCCAGCCACGCGGCTGACGTGCTCCAGGCCACCTGCTACTTCCTGTGCCAAGAGAGGGTAAAGCGCGCTTTAGAT
TCGGTGGACCAGGTCGCCGCCCTCATCTCAGCCACGGTCCACGACCTGGACCACCCGGGGAGGACCAACCCCTTCCTGTG
CAACTCGGGCAGCGACCTGGCCATCCTGTACAACGACTTCGCGGTGCTGGAGAGCCACCACGCGAGCCTGGCCTTCCAGC
TGACCCTCAGAGACGACAAGAGCAACATCTTCAAGAACATGGAGAGGAGTGACTTTCGGACGCTGCGCCAGATCATCATC
GACATGGTCTTGGCCACGGAGATGACCAAGCACTTCGTGCACCTCAACAAGTTTGTCAACAGCGTCGTCAAGCCCTTGGC
AGAGCTGGAGGAGCGCGAGGAGACGGATGCAGTGCGAGCAGACATCAGCAGGATGCTCAGGACTCCAGAGAACCGGACGA
TGATCAAGCGCATGATGATCAAGTGCGCCGACGTGTCCAACCCCTGCCGGCCCTTGGAGCAGTGCATCCAGTGGGCCTCA
CGCATCTCGGAGGAGTATTTTTCTCAGACCGATGAGGAGAAGCGGCGGAACTTACCTGTGGTGATGCCCGCTTTTGACAG
GAACACCTGCAGCATCCCCAAGGCCCAAATGTCCTTCATCAACTACTTCATCATAGACATGTTCGAAGCGTGGGACAACT
TTGTGGACTTGCCACTGCTGATGCACCACCTGGACAACAACTTTAGGTACTGGGAGGATCTCGACCATATGGACGTGCGG
GGCTGCCGCCCACCCCCAGACTAG

ORF - retro_mluc_256 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.18 %
Parental protein coverage: 82.25 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQVSSAEVRIGPMRLTQDPIQVLLIFAKEDSQSDGFWWACDRAGYRCNIARTPESALECFLDKHHEIIVID
......V..GPMR...D..QVLL.F.K.D.Q...F..ACD.AG..C.........L.CFL..HH.I...D
RetrocopyKIPTSDVQFGPMRFHPDQLQVLLAFSKDDNQCKAFRQACDQAGFKCTLTKEVQAVLTCFLSTHHDIVILD
ParentalHRQARHFDAEAVCRSIRATNLAEHTVILAVVSQASGNHEEASVLPLLHAGFSRRFVENSSIIACYNELIQ
HR..R..DA.A.CR.IR.....E.TVI..VV....G...E..V.PLL..GF.RR.VE..S..ACY.EL.Q
RetrocopyHRHPRQLDARALCRAIRSSQVSENTVIVGVVRRQDG---ELPVMPLLTTGFTRRYVEDPSPLACYTELLQ
ParentalIEHGEVRSQFKLRACNSVFTALDHCHEAIEITSDEHVIQYVNPAFERMMGYHKNELLGRELAELPKSDKN
...GEVRSQ.KLRACNS.FTAL.....A.EIT...H..QYVNPAF....G...NEL.G.ELA.LP...K.
RetrocopyLQFGEVRSQLKLRACNSIFTALEKSQDAVEITGEDHLVQYVNPAFVTTVGCDSNELVGKELAKLPVGEK-
ParentalRADLLDTINTCIRKGKEWQGVYYAKRKSGDSIQQHVKITPVIGQGGKIRHFVSLKKLCCTTDNNKQIHKI
...L..TIN.CI..GK.WQGVY.A..K.GD..QQ.VK..PV.GQGGKIRH.VS...L.....N.......
RetrocopyKSELFQTINSCITEGKGWQGVYCA--KNGDNTQQNVKVIPVNGQGGKIRHYVSIIRL----SNGNSKAGL
ParentalHRDSGDNSQTESHSFRYKSRRRESVDVKSISSRGSDAPSLQNRRYPSMARIHSMTIEAPITKVINIINAA
..DS...SQ......R.KS....S....S..SR.S.......RRY.S.ARIHS.T.EAPITKVINII.AA
RetrocopyQADSHMDSQVGKLRDRRKS----SLGGRSVGSRASEVAG--QRRYSSLARIHSVTMEAPITKVINIISAA
ParentalQENSPVTVAEALDRVLEILRTTELYSPQLGTKDEDPHTSDLVGGLMTDGLRRLSGNEYVFT-KNVHQSHS
QENS.V.V.EALDR.LEILRTTELYSPQ.G.KDEDPH..DL.GGL...GLRRLSGNEY....KN.....S
RetrocopyQENSSVPVSEALDRALEILRTTELYSPQFGAKDEDPHANDLLGGLIVNGLRRLSGNEYALSAKNLPRASS
ParentalHLAMPITINDVPPCIAQLLDNEESWEFNIFELEAVTHKRPLVYLGLKVFSRFGVCEFLRCSETTLRAWLQ
.........DVP..IA..L.NE.SWEF.IFELEA.T.KR.L.YL..K.F.RFG.CEFL.C.E.TLR.WLQ
RetrocopySMTASLPLHDVPKHIAEALENEDSWEFDIFELEAATQKRALSYLAIKIFTRFGICEFLKCPEPTLRLWLQ
ParentalVIEANYHSSNAYHNSTHAADVLHATAFFLGKERVKGSLDQLDEVAALIAATVHDVDHPGRTNSFLCNAGS
.IE..YHSSN.YHN..HAADVL.AT..FL..ERVK..LD..D.VAALI.ATVHD.DHPGRTN.FLCN.GS
RetrocopyMIESTYHSSNPYHNASHAADVLQATCYFLCQERVKRALDSVDQVAALISATVHDLDHPGRTNPFLCNSGS
ParentalELAVLYNDTAVLESHHTALAFQLTVKDSKCNIFKNIDRNHYRTLRQAIIDMVLATEMTKHFEHVNKFVNS
.LA.LYND.AVLESHH..LAFQLT..D.K.NIFKN..R...RTLRQ.IIDMVLATEMTKHF.H.NKFVNS
RetrocopyDLAILYNDFAVLESHHASLAFQLTLRDDKSNIFKNMERSDFRTLRQIIIDMVLATEMTKHFVHLNKFVNS
ParentalINKPMA
..KP.A
RetrocopyVVKPLA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_256 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Myotis lucifugus ENSMLUG00000016798 1 retrocopy
retro_mluc_256 ,


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