RetrogeneDB ID: retro_mluc_256

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430250:305987..308411(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024174
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: PDE8B
• Ensembl ID: ENSMLUG00000016798
• Aliases: None
• Description: None

Sequence

>retro_mluc_256
ATGGGCTGCGCCCCGAGCGTCCACATTTCCTCCGAGGCCCCGGGTGCGTACCTGGGCAGCAAAGAGGAGGAGGATGCGCA
GGACTCCTGGGCGCTGCTGCAGGGCGCCGGCCTCCCCTCGGACCCCTACCTGCCTCCCGGCAAGATACCCACGTCGGACG
TGCAGTTCGGCCCCATGAGGTTTCACCCGGATCAGCTCCAGGTGCTGCTGGCGTTCAGCAAGGACGATAACCAGTGCAAG
GCCTTCCGCCAGGCCTGCGACCAGGCCGGGTTCAAGTGCACGCTCACCAAGGAGGTGCAGGCGGTGCTGACCTGCTTCCT
GTCGACGCACCACGACATCGTCATCCTGGACCATAGACACCCCCGGCAGCTGGACGCGCGGGCGCTGTGCAGGGCCATCC
GATCGTCCCAGGTCTCCGAGAACACGGTCATTGTCGGGGTGGTGCGCCGGCAGGATGGGGAGCTGCCCGTGATGCCCCTC
CTCACCACCGGCTTCACCAGGCGCTACGTGGAGGACCCCAGCCCCCTGGCCTGCTACACGGAGCTGCTGCAGCTGCAGTT
CGGGGAGGTGCGGTCCCAGCTGAAGCTCAGGGCTTGCAACTCCATCTTCACGGCCTTGGAGAAAAGCCAGGACGCCGTGG
AGATCACAGGCGAGGACCACCTGGTGCAGTACGTGAACCCCGCGTTTGTAACCACCGTGGGCTGTGACTCTAATGAGCTG
GTCGGGAAGGAGTTAGCAAAACTCCCTGTGGGCGAGAAAAAGTCCGAGTTGTTCCAGACGATCAACTCATGCATCACGGA
GGGCAAGGGGTGGCAGGGCGTCTACTGTGCCAAAAACGGAGACAACACCCAGCAGAACGTGAAGGTCATCCCGGTGAACG
GGCAGGGAGGGAAGATCAGACACTATGTGTCCATCATCCGGCTGAGCAATGGGAACAGCAAGGCCGGCCTGCAGGCGGAC
TCGCACATGGACAGCCAGGTAGGGAAACTGAGGGACAGGAGGAAAAGCTCTCTCGGCGGCAGGAGCGTGGGCTCCCGGGC
CAGTGAAGTGGCCGGCCAGAGGCGCTACTCCTCGCTGGCCCGGATTCACTCGGTGACCATGGAGGCGCCCATCACCAAGG
TGATCAACATCATCAGTGCCGCCCAGGAGAACAGCTCCGTGCCCGTGTCGGAAGCCCTGGACCGGGCGCTGGAAATTCTG
AGAACCACGGAGTTATATTCCCCGCAGTTCGGGGCGAAGGATGAGGATCCTCACGCCAATGACCTCCTCGGGGGCCTGAT
AGTCAATGGTCTGCGAAGGCTCTCTGGGAACGAGTACGCTCTTTCAGCCAAAAACCTCCCGCGAGCGTCCAGCAGCATGA
CGGCCTCCCTGCCCCTCCACGACGTCCCGAAGCATATCGCTGAGGCCCTGGAGAACGAGGACTCCTGGGAATTTGACATT
TTTGAACTGGAGGCTGCCACGCAGAAAAGGGCTTTGAGTTACCTTGCTATCAAAATCTTTACCCGCTTTGGCATCTGTGA
ATTCTTAAAGTGCCCGGAGCCAACCCTGAGGCTGTGGTTGCAGATGATCGAATCCACTTACCATTCCTCTAACCCCTACC
ACAACGCCAGCCACGCGGCTGACGTGCTCCAGGCCACCTGCTACTTCCTGTGCCAAGAGAGGGTAAAGCGCGCTTTAGAT
TCGGTGGACCAGGTCGCCGCCCTCATCTCAGCCACGGTCCACGACCTGGACCACCCGGGGAGGACCAACCCCTTCCTGTG
CAACTCGGGCAGCGACCTGGCCATCCTGTACAACGACTTCGCGGTGCTGGAGAGCCACCACGCGAGCCTGGCCTTCCAGC
TGACCCTCAGAGACGACAAGAGCAACATCTTCAAGAACATGGAGAGGAGTGACTTTCGGACGCTGCGCCAGATCATCATC
GACATGGTCTTGGCCACGGAGATGACCAAGCACTTCGTGCACCTCAACAAGTTTGTCAACAGCGTCGTCAAGCCCTTGGC
AGAGCTGGAGGAGCGCGAGGAGACGGATGCAGTGCGAGCAGACATCAGCAGGATGCTCAGGACTCCAGAGAACCGGACGA
TGATCAAGCGCATGATGATCAAGTGCGCCGACGTGTCCAACCCCTGCCGGCCCTTGGAGCAGTGCATCCAGTGGGCCTCA
CGCATCTCGGAGGAGTATTTTTCTCAGACCGATGAGGAGAAGCGGCGGAACTTACCTGTGGTGATGCCCGCTTTTGACAG
GAACACCTGCAGCATCCCCAAGGCCCAAATGTCCTTCATCAACTACTTCATCATAGACATGTTCGAAGCGTGGGACAACT
TTGTGGACTTGCCACTGCTGATGCACCACCTGGACAACAACTTTAGGTACTGGGAGGATCTCGACCATATGGACGTGCGG
GGCTGCCGCCCACCCCCAGACTAG

Alignment

ORF - retro_mluc_256 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.18 %
• Parental protein coverage: 82.25 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QVSSAEVRIGPMRLTQDPIQVLLIFAKEDSQSDGFWWACDRAGYRCNIARTPESALECFLDKHHEIIVID
          ......V..GPMR...D..QVLL.F.K.D.Q...F..ACD.AG..C.........L.CFL..HH.I...D
Retrocopy KIPTSDVQFGPMRFHPDQLQVLLAFSKDDNQCKAFRQACDQAGFKCTLTKEVQAVLTCFLSTHHDIVILD

Parental  HRQARHFDAEAVCRSIRATNLAEHTVILAVVSQASGNHEEASVLPLLHAGFSRRFVENSSIIACYNELIQ
          HR..R..DA.A.CR.IR.....E.TVI..VV....G...E..V.PLL..GF.RR.VE..S..ACY.EL.Q
Retrocopy HRHPRQLDARALCRAIRSSQVSENTVIVGVVRRQDG---ELPVMPLLTTGFTRRYVEDPSPLACYTELLQ

Parental  IEHGEVRSQFKLRACNSVFTALDHCHEAIEITSDEHVIQYVNPAFERMMGYHKNELLGRELAELPKSDKN
          ...GEVRSQ.KLRACNS.FTAL.....A.EIT...H..QYVNPAF....G...NEL.G.ELA.LP...K.
Retrocopy LQFGEVRSQLKLRACNSIFTALEKSQDAVEITGEDHLVQYVNPAFVTTVGCDSNELVGKELAKLPVGEK-

Parental  RADLLDTINTCIRKGKEWQGVYYAKRKSGDSIQQHVKITPVIGQGGKIRHFVSLKKLCCTTDNNKQIHKI
          ...L..TIN.CI..GK.WQGVY.A..K.GD..QQ.VK..PV.GQGGKIRH.VS...L.....N.......
Retrocopy KSELFQTINSCITEGKGWQGVYCA--KNGDNTQQNVKVIPVNGQGGKIRHYVSIIRL----SNGNSKAGL

Parental  HRDSGDNSQTESHSFRYKSRRRESVDVKSISSRGSDAPSLQNRRYPSMARIHSMTIEAPITKVINIINAA
          ..DS...SQ......R.KS....S....S..SR.S.......RRY.S.ARIHS.T.EAPITKVINII.AA
Retrocopy QADSHMDSQVGKLRDRRKS----SLGGRSVGSRASEVAG--QRRYSSLARIHSVTMEAPITKVINIISAA

Parental  QENSPVTVAEALDRVLEILRTTELYSPQLGTKDEDPHTSDLVGGLMTDGLRRLSGNEYVFT-KNVHQSHS
          QENS.V.V.EALDR.LEILRTTELYSPQ.G.KDEDPH..DL.GGL...GLRRLSGNEY....KN.....S
Retrocopy QENSSVPVSEALDRALEILRTTELYSPQFGAKDEDPHANDLLGGLIVNGLRRLSGNEYALSAKNLPRASS

Parental  HLAMPITINDVPPCIAQLLDNEESWEFNIFELEAVTHKRPLVYLGLKVFSRFGVCEFLRCSETTLRAWLQ
          .........DVP..IA..L.NE.SWEF.IFELEA.T.KR.L.YL..K.F.RFG.CEFL.C.E.TLR.WLQ
Retrocopy SMTASLPLHDVPKHIAEALENEDSWEFDIFELEAATQKRALSYLAIKIFTRFGICEFLKCPEPTLRLWLQ

Parental  VIEANYHSSNAYHNSTHAADVLHATAFFLGKERVKGSLDQLDEVAALIAATVHDVDHPGRTNSFLCNAGS
          .IE..YHSSN.YHN..HAADVL.AT..FL..ERVK..LD..D.VAALI.ATVHD.DHPGRTN.FLCN.GS
Retrocopy MIESTYHSSNPYHNASHAADVLQATCYFLCQERVKRALDSVDQVAALISATVHDLDHPGRTNPFLCNSGS

Parental  ELAVLYNDTAVLESHHTALAFQLTVKDSKCNIFKNIDRNHYRTLRQAIIDMVLATEMTKHFEHVNKFVNS
          .LA.LYND.AVLESHH..LAFQLT..D.K.NIFKN..R...RTLRQ.IIDMVLATEMTKHF.H.NKFVNS
Retrocopy DLAILYNDFAVLESHHASLAFQLTLRDDKSNIFKNMERSDFRTLRQIIIDMVLATEMTKHFVHLNKFVNS

Parental  INKPMA
          ..KP.A
Retrocopy VVKPLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_256 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000016798	1 retrocopy	retro_mluc_256 ,