RetrogeneDB ID: retro_mluc_2563

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430953:71343..72617(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024977
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: PLEKHA2
• Ensembl ID: ENSMLUG00000011191
• Aliases: None
• Description: None

Sequence

>retro_mluc_2563
ATGCCTTCTGTGGATCGGCAGAACCGAATCTGTGGGTTTCTGGACATCGAGGAGAATGAGGACAGTGGCAAGTTTCTGCG
GAGGTACTTCATTCTGGACACCCAGGCCCACTACCTTCTCTGGGACATGGACAACCCCCAGAACCTGGCAATTGGGGCAG
GAGCTGTTGGATCTTTGCAGCTGACCTACATCTCGAAGGTGAGCATAGCCACCCCAAAGCGGAAACCAAAGACTCCATTT
GGCTTTGTCATCAATGCCCTCTCTCAGAGGTATTTTCTTCAAGCCAATGACCAGAAAGATCTGAAGGACTGGGTTGAAGC
TCTGAACCAAGCCAGCAAAATCACTGTACCCAAAGTTGGGAACCTGCCTCTGAGACGGAAGTGCTCAAAAGCCTAGCAGC
TCCCCCGGCCCTGGAGAAGAAGCCGCAGGTGGCCTACAAGACCGAGATCATCGGAGGGGCGGTGGTCCACACGCCCATCA
ACCAGAATGGTGGGGACGGGCAGGAAGGGGGTGAGCCAGGGTCCCACGCCATCCTTCGAAGGTCTCAGAGTTACATTCCC
ACGACGGGCTGCCGGGTACCCACTGGCCACCCCTTCATCAAGAGCGGCTACTGCGTGAAGCCAGGGAATGTGCGGAAGAG
CTGGAAACGTCACTTCTTTGCCCTTGATGACTTCAGCACCTGCTACTTCAAGTGTGAGCAGGACCGAGAACCACTGCACA
CGATATTTCTCAAGGATGTCCTCAGGACCCATGAGTGTCTGGTCAAATCTGGGGATCTCTTAATGCGGGACAACCTGTTT
GAAATCATCACAAGCTCCAGGACCTTCTATGTACAGGCGGACAGTCCAGGAGACATGCACAGCTGGATTAAAGAGATCAG
GGCAGCTGTCCAGGCCCTCAAGTGCCACCCCAGAGAAATGTCCTTTTCTCGATCCATTTCTTTGACTCGCTCTGGAAGCT
CCAGCCTGTCGGGTGGGCCCAACTCTGTCTTCTGCAGAGGACGGCCACCTGTGGAAGAGAAGAAAGCCCTCTGCAAAGCC
CCCTCGGTGGCCTCCTCCTGGCAGCCCTGGACACCTGTCCCCCAGGCGGGGGAAAAGCTACATCCACCTGAAGAGACTCT
TGAGGACTCTTTGTTCACGTCTCGACTTGGGGAGAGCAATACTTCCGGGGCATTGCCCAGCTCCTGGATAAGGCACCGAT
CGGAGCCCCAGCACCCCAAGGAGAAGCCATTTATGTTCAACCTTGAAGATGAGAACATACGGACTTCTGATGTG

Alignment

ORF - retro_mluc_2563 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.01 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTQANYLLWYMDNPQNLAIGAGAVGSLQLTYISKVSIA
          MP.VDRQNRICGFLDIEENE.SGKFLRRYFILDTQA.YLLW.MDNPQNLAIGAGAVGSLQLTYISKVSIA
Retrocopy MPSVDRQNRICGFLDIEENEDSGKFLRRYFILDTQAHYLLWDMDNPQNLAIGAGAVGSLQLTYISKVSIA

Parental  TPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKVGNLPLT-TEVLKSLAAPPALE
          TPK.KPKTPF.FVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKVGNLPL..TEVLKSLAAPPALE
Retrocopy TPKRKPKTPFGFVINALSQRYFLQANDQKDLKDWVEALNQASKITVPKVGNLPLR<TEVLKSLAAPPALE

Parental  KKPQVAYKTEIIGGVVVHTPINQNGGDGQEGGEPGSHAILRRSQSYIPTTGCRVPTGHPFIKSGYCVKQG
          KKPQVAYKTEIIGG.VVHTPINQNGGDGQEGGEPGSHAILRRSQSYIPTTGCRVPTGHPFIKSGYCVK.G
Retrocopy KKPQVAYKTEIIGGAVVHTPINQNGGDGQEGGEPGSHAILRRSQSYIPTTGCRVPTGHPFIKSGYCVKPG

Parental  NVRKSWKRRFFALDDFSICYFKCEQDREPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTFYVQ
          NVRKSWKR.FFALDDFS.CYFKCEQDREPL.TIFLKDVL.THECLVKSGDLLMRDNLFEIITSSRTFYVQ
Retrocopy NVRKSWKRHFFALDDFSTCYFKCEQDREPLHTIFLKDVLRTHECLVKSGDLLMRDNLFEIITSSRTFYVQ

Parental  ADSPEDMHSWIKEIRAAVQALKCHPREMSFSRSISLTRSGSSSLSGGPNSVFCRGRPPVEEKKALCKAPS
          ADSP.DMHSWIKEIRAAVQALKCHPREMSFSRSISLTRSGSSSLSGGPNSVFCRGRPPVEEKKALCKAPS
Retrocopy ADSPGDMHSWIKEIRAAVQALKCHPREMSFSRSISLTRSGSSSLSGGPNSVFCRGRPPVEEKKALCKAPS

Parental  VASSWQPWTPVPQAGEKLHPPEETLEDSLFTSRLGESNTSGALPSSRIRHRSEPQHPKEKPFMFNLDDEN
          VASSWQPWTPVPQAGEKLHPPEETLEDSLFTSRLGESNTSGALPSS.IRHRSEPQHPKEKPFMFNL.DEN
Retrocopy VASSWQPWTPVPQAGEKLHPPEETLEDSLFTSRLGESNTSGALPSSWIRHRSEPQHPKEKPFMFNLEDEN

Parental  IRTSDV
          IRTSDV
Retrocopy IRTSDV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2563 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011191	1 retrocopy	retro_mluc_2563 ,