RetrogeneDB ID: retro_mluc_2571

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431036:45146..46034(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL4
• Ensembl ID: ENSMLUG00000003351
• Aliases: None
• Description: None

Sequence

>retro_mluc_2571
ATGTCAGTGGTGCACCAGCTGTCACCAGGATGGTTACTGGATCATCTTTCTTTCATTAACAAGATCAACTATCAAGTTCA
CCAGCATCATGAGTCTTGTTGCAGTAAAAATGAGCCCACTGCTTCTGTTCACCTTGATTCTGTGTCCTCCTTTGGATCCT
CAACTAAATTTATTACTACCGACTCTACCACTAAGCCCAAGAATGATGGTGGAGGAAATTGTGAAATGTTCATACAAAAA
TATATTTTTAGATCTGAACTGTTTGATATCACTAAACCTTATATAACTTCAGCTATTCACAAGGAATGCCAACAAAATAA
TGAAAAGGAAGATCTAATGAATGGTGTTAAAAAAGAAATCTCCATTTCTACTCTTGGGAAGAAGCGTAAAAGGTGTGTTG
GTTTCAATCAAGGTGAATTGGATGCTATGGAATACCATGAAAAGATCAGGGGGCTGATTTTGGATGGATCTTCACAGATA
ATCCAAGAAGGTTTAAAAAGTGGCTTTCTTCATCCACTTTCTGAAAAACAGGACAAGTGTAATGAGCCCATTACTTTATC
ATTTGATACTTGCAATTTATCAGAATTATGTGAAATGGCAAAGCATTTGCCTTCTCTGAATGAAATGGAACTTCTGACAT
TACAATTGATGGAAAACGATATGTCTGTTACAGAGCAGGATTTATTTTCACGGATTGTTGAAAACAACTCTAGATTTACA
AAAATGATTACTTTAATGGGACAGAAATACCTGGTGCCACCAAAAAGCAGTTTTCTTTTGTCTGACATTTCTTGTATGCA
CCCGCTTCTGAATTGTAGGAAAACATATGATGTGATTGTGATAGATCCACCATGGCAGAACAAGTCAGTTAAAAGAAGTA
ACAGATTC

Alignment

ORF - retro_mluc_2571 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.65 %
• Parental protein coverage: 62.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSVVHQLSPGWLLDHLSFINKINYQVQQHHESCCSKNEPTASVHLDSVSSFGSSTKFITSDSTTKPKNDG
          MSVVHQLSPGWLLDHLSFINKINYQV.QHHESCCSKNEPTASVHLDSVSSFGSSTKFIT.DSTTKPKNDG
Retrocopy MSVVHQLSPGWLLDHLSFINKINYQVHQHHESCCSKNEPTASVHLDSVSSFGSSTKFITTDSTTKPKNDG

Parental  GGNCEMFIQKYIFRSELFDITKPYITSAIHKECQQNNEKEDLMNGVKNEISISTLGKKRKRCVGFNQGEL
          GGNCEMFIQKYIFRSELFDITKPYITSAIHKECQQNNEKEDLMNGVK.EISISTLGKKRKRCVGFNQGEL
Retrocopy GGNCEMFIQKYIFRSELFDITKPYITSAIHKECQQNNEKEDLMNGVKKEISISTLGKKRKRCVGFNQGEL

Parental  DAMEYHEKIRGLILDGSSQIIQEGLKSGFLHPLSEKQDKCNEPITLSFDTCNLSELCEMAKHLPSLNEME
          DAMEYHEKIRGLILDGSSQIIQEGLKSGFLHPLSEKQDKCNEPITLSFDTCNLSELCEMAKHLPSLNEME
Retrocopy DAMEYHEKIRGLILDGSSQIIQEGLKSGFLHPLSEKQDKCNEPITLSFDTCNLSELCEMAKHLPSLNEME

Parental  LLTLQLMENDMSVTEQDLFSRIVENNSRFTKMITLMGQKYLVPPKSSFLLSDISCMHPLLNCRKTYDVIV
          LLTLQLMENDMSVTEQDLFSRIVENNSRFTKMITLMGQKYLVPPKSSFLLSDISCMHPLLNCRKTYDVIV
Retrocopy LLTLQLMENDMSVTEQDLFSRIVENNSRFTKMITLMGQKYLVPPKSSFLLSDISCMHPLLNCRKTYDVIV

Parental  IDPPWQNKSVKRSNRY
          IDPPWQNKSVKRSNR.
Retrocopy IDPPWQNKSVKRSNRF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2571 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000004505	1 retrocopy	retro_lafr_501,
Myotis lucifugus	ENSMLUG00000003351	1 retrocopy	retro_mluc_2571 ,