RetrogeneDB ID: retro_mluc_258

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429865:458933..459485(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028522
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015290
• Aliases: None
• Description: None

Sequence

>retro_mluc_258
ATGCTGAGGAAGATGGGTGAGGCGGTGGCCAGAGTTGCGAGGAAGGTCAACGAGACGGTGGAGAGTGACTCTGACACTCT
GGATCTGGCGGAGTGCAAGCTGGTGTCTTTCCCCATTGGCATCTGCAAGGTCCTGTGGAATGTCACTGACCAGATCCACC
TCATCACACTGGCCAACAATGAGCTCAAGTCCCTCACCAGCAAGTTCATGACCATATTCTTTCAGCTTCAAAAGCTCTGC
CTGGAAGGGAACTTCCTGTACCATCTCCCCAACGAGGTCAGTGCCCTGCAGCACTTCAAGGCCATCCACCTGTCTCGGAA
CCAGTTTCATGACTTCCCTGAGCAGCTCACCCCCCTGCCGGCACTGGAGACCATCATTTTGGAGGAGAACAAGATTGTGG
ATGTGCCCATGGAGAAGCTAGCCACCATGCCTGCCTTGTGCAGCATCAATCTCCACTTCAACCCGCTAAACGCCGAGGTG
CGCGTCATCACCCTGCCACTCATCAAGTTTGACATGCTCATGTCTCCAGAGGGCACATGGGCCCCGCCAACC

Alignment

ORF - retro_mluc_258 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.07 %
• Parental protein coverage: 99.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLRKMGEAVARVARKVNETVESDSDTLDLAECKLVSFPIGIYKVLRNVTDQIHLITLANNELKSLTSKFM
          MLRKMGEAVARVARKVNETVESDSDTLDLAECKLVSFPIGI.KVL.NVTDQIHLITLANNELKSLTSKFM
Retrocopy MLRKMGEAVARVARKVNETVESDSDTLDLAECKLVSFPIGICKVLWNVTDQIHLITLANNELKSLTSKFM

Parental  TTFCQLQELRLEGNFLHRLPNEVSALQHLKAIDLSRNQFHDFPEQLTTLPALETINLEENEIVDVPVEKL
          T.F.QLQ.L.LEGNFL..LPNEVSALQH.KAI.LSRNQFHDFPEQLT.LPALETI.LEEN.IVDVP.EKL
Retrocopy TIFFQLQKLCLEGNFLYHLPNEVSALQHFKAIHLSRNQFHDFPEQLTPLPALETIILEENKIVDVPMEKL

Parental  AAMPALRSINLRFNPLNAEVRVIAPPLIKFDMLMSPEGTRAPP
          A.MPAL.SINL.FNPLNAEVRVI..PLIKFDMLMSPEGT.APP
Retrocopy ATMPALCSINLHFNPLNAEVRVITLPLIKFDMLMSPEGTWAPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_258 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000015290	1 retrocopy	retro_mluc_258 ,